Variovorax paradoxus B4: VAPA_1c23830
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Entry
VAPA_1c23830 CDS
T02835
Name
(GenBank) putative cystathionine beta-lyase
KO
K01760
cysteine-S-conjugate beta-lyase [EC:
4.4.1.13
]
Organism
vpd
Variovorax paradoxus B4
Pathway
vpd00270
Cysteine and methionine metabolism
vpd00450
Selenocompound metabolism
vpd01100
Metabolic pathways
vpd01110
Biosynthesis of secondary metabolites
vpd01230
Biosynthesis of amino acids
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09100 Metabolism
09105 Amino acid metabolism
00270 Cysteine and methionine metabolism
VAPA_1c23830
09106 Metabolism of other amino acids
00450 Selenocompound metabolism
VAPA_1c23830
Enzymes [BR:
vpd01000
]
4. Lyases
4.4 Carbon-sulfur lyases
4.4.1 Carbon-sulfur lyases (only sub-subclass identified to date)
4.4.1.13 cysteine-S-conjugate beta-lyase
VAPA_1c23830
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Gene cluster
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Motif
Pfam:
Cys_Met_Meta_PP
Beta_elim_lyase
DegT_DnrJ_EryC1
Aminotran_5
Motif
Other DBs
NCBI-ProteinID:
AGU49485
UniProt:
T1XBD9
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All DBs
Position
1:2543856..2545049
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AA seq
397 aa
AA seq
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MSKPSTTLIHHPYTPPANFAAPQPGIYKASTVFFADVAAMRARDWKTKAGYTYGLHGTPT
TFTLEERLATLEGGTECLLVPSGLAAISLVSFAFLKSGDEVLIPDNAYGPNKALATGELA
NFGITHRLYDAMNPSDLAAKLSDRTRLVWLEAAGSVTMEFPDLPALVKACRARGVVTALD
NTWGAGLAFAPFDFNGSGQGVDISVHALTKYPSGGGDVLMGSVVTRDERLHRALKLTHMR
TGFGVGVGDVETLLRSLPSIGLRYAAHDRSARELARWLAGREEIAQVLHPALEGSPGHAN
WRALCGGADLAAGLFSIVFDERYSTEQVDRFCDSLNLFRLGYSWGGPVSLVVPYDIGLMR
DASVARWPHKGTLVRFSVGLEDVEDLRADLQQALARM
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgagcaagccctccacgaccctgattcaccacccctacacgccgcccgccaacttcgcc
gcgccgcagcccggcatctacaaggcctcgacggtatttttcgccgacgtggccgcgatg
cgcgcgcgcgactggaagaccaaggccggctacacctacggcctgcacggcacgcccacc
accttcacgctcgaggagcgcctggccaccctcgaaggcggcaccgagtgcctgctggtg
ccgagcggcctggccgccatttcgctggtttcctttgccttcctgaagagcggcgacgag
gtgctgattcccgacaacgcctacggccccaacaaggcgctggcgaccggcgaactggcc
aacttcggcatcacgcaccgcctgtacgacgcgatgaacccatccgatctggccgccaag
ctctcggaccgcacgcggctggtgtggctcgaggcggcgggctcggtgacgatggagttt
cccgacctgccggcactcgtgaaagcctgccgcgcgcgcggcgtggtgacggcgctggac
aacacctggggcgcgggcctggcattcgcgcccttcgatttcaacggcagcggccagggc
gtggacatttcggtgcacgcgctcaccaaatacccgagcggcggcggcgacgtgctgatg
ggcagcgtcgtcacgcgcgacgagcggctgcatcgcgcgctcaagctcacccacatgcgc
acgggattcggcgtcggcgtcggcgacgtggaaacgctgctgcgctcgctgccgagcatc
gggctgcgctatgccgcgcacgaccgttcggcgcgcgagctggcgcgctggctcgccggc
cgcgaagagatcgcgcaggtgctccatccggcgctcgaggggtcgcccggccacgcgaac
tggcgtgcgctgtgcggcggcgccgacctggccgccggactgttctcgatcgtgttcgac
gagcgctacagcaccgagcaggtcgaccgcttctgcgacagcctgaacctgttccgcctc
ggctattcgtggggcgggccggtgagcctggtcgtgccctacgacatcggcctgatgcgc
gatgccagcgtggcgcgctggccccacaagggaacgctggtgcgcttctcggtcgggctg
gaagacgtggaagacctgcgggccgacctgcagcaggcgctcgcgcggatgtaa
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