Variovorax paradoxus B4: VAPA_1c26020
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Entry
VAPA_1c26020 CDS
T02835
Symbol
ligA
Name
(GenBank) DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
vpd
Variovorax paradoxus B4
Pathway
vpd03030
DNA replication
vpd03410
Base excision repair
vpd03420
Nucleotide excision repair
vpd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VAPA_1c26020 (ligA)
03410 Base excision repair
VAPA_1c26020 (ligA)
03420 Nucleotide excision repair
VAPA_1c26020 (ligA)
03430 Mismatch repair
VAPA_1c26020 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vpd03032
]
VAPA_1c26020 (ligA)
03400 DNA repair and recombination proteins [BR:
vpd03400
]
VAPA_1c26020 (ligA)
Enzymes [BR:
vpd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
VAPA_1c26020 (ligA)
DNA replication proteins [BR:
vpd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
VAPA_1c26020 (ligA)
DNA repair and recombination proteins [BR:
vpd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
VAPA_1c26020 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
VAPA_1c26020 (ligA)
MMR (mismatch excision repair)
DNA ligase
VAPA_1c26020 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
VAPA_1c26020 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
DUF4796_N
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
AGU49700
UniProt:
T1XC16
LinkDB
All DBs
Position
1:2755623..2757707
Genome browser
AA seq
694 aa
AA seq
DB search
MTTRDEAAREAAALSEQLHKHAHLYYVLDAPELPDAEYDRMFQRLQALEAEYPELRRPDS
PTQRVGGKVLDGFVKVRHRVPMLSIRTETDITPDGASAFDARVRKELGLAEDGPQVEYVC
ELKFDGLAMNLRYENGVLVQAATRGDGEVGEEVTQNIRTVREIPLRLNGKAPPVVEVRGE
IYMKRADFDALNERQREKIAAGQKNEKVFVNPRNAAAGAVRQLDPAIAAARPLSFFAYGL
GEVTPASEGGPDFPTQFEWLQQFDAWGFPVAKQTARATGAIELIAFHENIGRQRDALPYD
IDGVVYKVDSIELQRRLGFVSREPRWAVAHKYPAQEQITEVLGIEVQVGRTGKLTPVAKL
APVFVGGVTVTNATLHNEDEARRKDVRVGDKVIVRRAGDVIPEVVGVVPESLARPDSERG
PLFTMPHQCPVCGSEALREEGEVDYRCTGGLFCAAQRKEAILHFAARRAVDIDGLGDKLV
EQLVDANLIRILPDLYRLGFTTLAGLDRMAEKSARNLVDALEASKKTTLPRFLFGLGIRH
VGESTAKDLAKHFGKLDAIMDASEEQLLEVNDVGPVVAQSLRTFFDQPHNREVVEQLRAC
GLTWEEGEPAARAPKPLAGLTFVITGTLPTLSRDEAKDKLEAAGAKVAGSVSKKTSYLVA
GEEAGSKLDKAREIGVNVIDEAHMLEILANGVPG
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atgaccacgcgcgacgaagcggcacgcgaagccgccgcactgagcgaacagctccacaag
cacgcccatctttactacgtgctcgacgcacccgagctgcctgacgccgagtacgacagg
atgttccagcggctgcaggcactggaggccgaataccccgaactgcgcaggcccgattcg
cccacgcagcgcgtcggcggcaaggtgctcgatggcttcgtgaaggtgcgccacagggtg
ccgatgctgtcgatccgcaccgagaccgacatcacgcccgacggtgcgagcgcgttcgac
gcccgcgtgcgcaaggagctcggcctggccgaggacgggccgcaggtcgagtacgtctgc
gagctcaagttcgacggcctggccatgaacctgcgctacgagaacggggtgctggtacag
gccgcgacgcgcggcgacggcgaagtcggcgaagaagtcacgcagaacatccgcacggtg
cgcgagattccgctgcggctcaacggcaaggcgccgcccgtggtcgaggtgcgcggcgag
atctacatgaagcgcgccgatttcgacgcgctcaacgagcgccagcgcgagaagatcgcg
gccgggcagaagaacgagaaggtcttcgtcaacccgcgcaatgcggcggccggcgcggtg
cgccagctcgatccggccattgcggcggcgcggccgctgagcttttttgcctacggcctc
ggcgaggtcacgccggccagcgaaggcggaccggattttccgacccagttcgaatggctg
cagcagttcgatgcctggggattcccggtggccaaacagactgcgcgtgcgaccggcgcc
attgaactgattgccttccacgagaacatcgggcgccagcgcgatgccttgccctacgac
atcgacggcgtggtctacaaggtcgacagcatcgagctgcagcggcggctgggcttcgtc
tcgcgcgagccgcgctgggccgtggcgcacaagtatccggcgcaggagcagatcaccgag
gtgctcggcatcgaagtgcaagtgggccgcaccggcaagctcacgccggtggccaagctc
gcgccggtgttcgtcggcggcgtgaccgtgaccaacgccacgctgcacaacgaggacgag
gcacgccgcaaggacgtgcgcgtgggcgacaaggtcatcgtgcggcgtgccggcgacgtg
atccccgaagtggtcggcgtggtgccggaaagcctggcccggcccgacagcgagcgcggg
ccgctgttcaccatgccgcaccagtgcccggtgtgcggatcggaggcgctgcgcgaagaa
ggcgaagtcgactaccgctgcaccggcggcctgttctgcgcggcccagcgcaaggaagcc
atcctgcactttgcggcgcggcgcgcggtcgacatcgacgggctcggcgacaagctggtc
gagcaattggtcgatgccaacctgatccgcatcttgcccgacctctacaggctggggttc
accactctggcggggctggaccgcatggccgagaagtcggccaggaacctcgtcgatgcg
ctcgaggcctcgaagaagaccacgctgccgcgcttcctgttcgggctcgggatccggcat
gtgggcgagagcaccgcgaaagacctggccaagcatttcggcaagctcgacgcgatcatg
gacgcgagcgaggagcagttgcttgaagtcaacgatgtcggcccggtcgttgcccaaagc
ctgcgcaccttcttcgaccagccgcacaaccgcgaggtggtcgagcagctgcgggcctgc
gggctgacgtgggaagagggcgagcccgctgcgcgtgcccccaagccgttggcgggtctg
accttcgtgattaccggtacccttcctacgctgagcagggacgaagcgaaggataaattg
gaggcagccggcgccaaggtggcgggctcggtcagcaagaagacaagctaccttgtggct
ggcgaggaggccggcagcaagctcgacaaggcccgtgaaatcggcgtgaacgtgatcgat
gaagcgcatatgctggagatacttgccaatggtgttccgggttga
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