Variovorax paradoxus EPS: Varpa_3223 Help Entry Varpa_3223        CDS       T01392                                  Name (GenBank) DNA ligase, NAD-dependent   KO K01972   DNA ligase (NAD+) [EC:6.5.1.2] Organism vpe  Variovorax paradoxus EPS Pathway vpe03030   DNA replication vpe03410   Base excision repair vpe03420   Nucleotide excision repair vpe03430   Mismatch repair Brite KEGG Orthology (KO) [BR:vpe00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     Varpa_3223    03410 Base excision repair     Varpa_3223    03420 Nucleotide excision repair     Varpa_3223    03430 Mismatch repair     Varpa_3223  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:vpe03032]     Varpa_3223    03400 DNA repair and recombination proteins [BR:vpe03400]     Varpa_3223 Enzymes [BR:vpe01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.2  DNA ligase (NAD+)      Varpa_3223 DNA replication proteins [BR:vpe03032]  Prokaryotic type   DNA Replication Elongation Factors    Elongation factors (bacterial)     Other elongation factors      Varpa_3223 DNA repair and recombination proteins [BR:vpe03400]  Prokaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     DNA ligase      Varpa_3223    NER (nucleotide excision repair)     GGR (global genome repair) factors      Varpa_3223    MMR (mismatch excision repair)     DNA ligase      Varpa_3223   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     SHDIR (short-homology-dependent illegitimate recombination)      RecET pathway       Varpa_3223 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD Nlig-Ia PTCB-BRCT HHH 5_3_exonuc BRCT_2 DUF4796_N RUBY_RBDX Zn_ribbon_PADR1 Lar_restr_allev Zn_Ribbon_TF Motif Other DBs NCBI-ProteinID:  ADU37409 UniProt:  E6VA25 LinkDB All DBs Position complement(3470509..3472593) Genome browser AA seq 694 aa AA seqDB search MTTRDEAAREAAALSEQLHKHAHLYYVLDAPELPDAEYDKLFQRLQALETEFPELRTPDS PTQRVGGKVLDGFTKVRHKVPMLSIRTETDITPGGASAFDARVRKELGLAEDGPQVSYVC ELKFDGLAMNLRYEDGVLVQAATRGDGEVGEDVTQNIRTVREIPLRLSGKAPPVVEVRGE VYMKRADFDALNERQREKIAAGQKNEKIFVNPRNAAAGAVRQLDPAIAAARPLSFFAYGL GEVTPAAEGGPDCPTQFDWLQQFHAWGFPVATQTARATGAIELIAFHENIGRQRDALPYD IDGVVYKVDSIELQRQLGFVSREPRWAVAHKYPAQEQLTDVLGIEIQVGRTGKLTPVAKL APVFVGGVTVTNATLHNEDEARRKDVRVGDTVIVRRAGDVIPEVVGVVPESLAKPEGERG PVFTMPHKCPVCGSEAVREEEEVDYRCTGGLFCAAQRKEAILHFAARRAVDVDGLGDRLV EQLVDANLIRTLPDLYKLGFTTLAGLDRMAEKSAKNLVDALEASKKTTLPRFLFGLGIRH VGESTAKDLAKHFGKLDAIMDATEQQLLEVNDVGPVVAQSLRTFFDQPHNREVVEQLRAC GLTWEEGEPAARAPKPLAGLTFVITGTLPTLGRDEAKDKLEAAGAKVAGSVSKKTHYLVA GEEAGSKLDKAREIGVAVIDEARMLEILENGITE NT seq 2085 nt NT seq  +upstreamnt  +downstreamnt atgacgacgcgcgacgaagcggcacgcgaagccgccgcactgagcgaacagcttcacaag cacgcccacctctattacgtgctcgacgcgcccgagctgcccgacgccgagtacgacaag ctcttccagcgactgcaggccctggagactgaatttcccgagctgcgcacgcccgattcg ccgacgcagcgcgtgggcggcaaggtgctcgacggtttcaccaaggtgcgccacaaggtg ccgatgctgtcgatccgtaccgagaccgacatcacgccgggcggcgccagtgccttcgat gcgcgtgtgcgcaaggagttgggcctggccgaggacggtccgcaggtgtcatatgtgtgc gagctcaagttcgacggcctcgccatgaacctgcgctacgaagacggcgtgctggtgcag gcggcgacgcgcggcgacggcgaggtcggcgaagacgtcacgcagaacatccgcacggtg cgcgaaattccgctgcggctcagcggcaaggcgccgcccgtggtcgaggtgcgcggcgag gtctacatgaagcgtgccgatttcgacgcgctcaacgaacgccagcgcgagaagatcgcg gccggccagaagaacgagaagatcttcgtgaatccgcgcaatgcggcggccggcgcggtg cggcaactcgatccggcgattgccgcggcgcggccgctgagcttcttcgcgtacggcctg ggcgaagtcacgccggccgcagaaggcgggccggattgcccgacccagttcgactggctg cagcagttccatgcctggggttttccggtggccacgcagaccgcgcgggcgaccggtgcc atcgagctgatcgcgttccacgagaacatcggccggcagcgcgatgccttgccttacgac atcgacggcgtggtctacaaggtcgacagcatcgaactgcagcggcaactgggctttgta tcgcgcgagccgcgctgggccgtggcacataaatacccggcgcaggagcagctgaccgac gtgctcggcatcgagatccaggtcggccgcaccggcaagctcacgccggtggccaagctc gcgccggtgttcgtcggcggcgtgaccgtgaccaacgccacgctgcacaacgaggacgag gcccgccgcaaggacgtgcgcgtgggtgacacggtcatcgtgcggcgtgccggagacgtg attcccgaagtggtcggcgtggtgcccgagagcctcgccaagccagagggcgaacgcggc ccggtcttcaccatgcctcacaagtgccccgtgtgcggctcggaagccgtgcgcgaagag gaagaggtcgattaccgctgcaccggcgggctgttctgcgcggcgcagcgcaaggaggcc atcctgcacttcgcggcgcggcgcgcggtcgatgtcgacgggctgggcgacaggctggtc gagcaactggtggatgccaacctcatccgcaccttgcccgatctctacaagctcggattc accacgctcgcggggctggaccgcatggccgagaagtcagccaagaatctggtcgacgca ctcgaagcgtccaagaaaaccacgctgccgcgcttcctgttcgggctgggtatccggcac gtgggcgaaagcacggcgaaggacctggccaagcatttcggcaagctcgacgccatcatg gacgcgaccgaacagcagctgctcgaggtcaacgacgtggggccggtggtggcgcagagc cttcgcaccttcttcgaccagccgcacaaccgcgaggtcgtcgagcaactgcgcgcctgc gggctgacctgggaagagggcgagcccgcagctcgcgcgcccaagcctttggcgggcctg accttcgtgatcaccggcacccttcctacgctgggccgcgacgaggcgaaggataaattg gaggcagccggggccaaggtcgccggctccgtcagcaagaagacccattacctcgtggcc ggcgaagaagccggcagcaagctcgacaaggcccgggaaatcggggtggcggtgatcgac gaggcgcgtatgctggagattctcgagaacggcatcacggaatga

DBGET integrated database retrieval system