Variovorax paradoxus EPS: Varpa_4879
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Entry
Varpa_4879 CDS
T01392
Name
(GenBank) efflux transporter, RND family, MFP subunit
KO
K03585
membrane fusion protein, multidrug efflux system
Organism
vpe
Variovorax paradoxus EPS
Pathway
vpe01501
beta-Lactam resistance
vpe01503
Cationic antimicrobial peptide (CAMP) resistance
Brite
KEGG Orthology (KO) [BR:
vpe00001
]
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
Varpa_4879
01503 Cationic antimicrobial peptide (CAMP) resistance
Varpa_4879
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
vpe03036
]
Varpa_4879
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
vpe02000
]
Varpa_4879
01504 Antimicrobial resistance genes [BR:
vpe01504
]
Varpa_4879
Chromosome and associated proteins [BR:
vpe03036
]
Prokaryotic type
Chromosome partitioning proteins
Divisome proteins
Varpa_4879
Transporters [BR:
vpe02000
]
Other transporters
Accessory factors involved in transport [TC:
8
]
Varpa_4879
Antimicrobial resistance genes [BR:
vpe01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexAB-OprM [MD:
M00718
]
Varpa_4879
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HlyD_D23
Biotin_lipoyl_2
HlyD_3
CusB_dom_1
T2SSM
Motif
Other DBs
NCBI-ProteinID:
ADU39040
UniProt:
E6V117
LinkDB
All DBs
Position
5295624..5296778
Genome browser
AA seq
384 aa
AA seq
DB search
MTSKLLLSLSLLASLALAACGGKPAPAAADAPGEVGVVTLHARDVPVLTELAGRTAAFRV
SEVRPQVNGIVRKRLFEEGGMVRAGQVLYEIEPGPFEAAHEQAEASLATAQAGIASLRSK
AERHGELVKANAVSRQEHDEAQAALAQAQAGVKAAQAAVKAARINLEFTRITAPIAGRIG
RSAITEGALVAPGQATALATIQRLDPIYVDVIQSSLELTKLKRRFISGDMAPASTRVTLR
MEDGLPYPHEGMLKFTEVGVDAATGSVTLRAEFPNPQGLLLPGMYVRAQVEAGVERHAIL
APQRGVGRNEKGEPTALVVGAGDKVELRPLEVRGASGDQWIVSKGLREGDRLVVDGLQRA
HPGEKVKPVPVSLEAATAATTAAE
NT seq
1155 nt
NT seq
+upstream
nt +downstream
nt
atgacctccaagctcctgctctccctttccctgctcgcctccctcgcgctcgcggcctgc
ggcggcaagccggcccccgcagccgccgacgcaccgggcgaagtcggcgtggtgacgctg
cacgcgcgcgacgtgccggtgctcaccgaactggccggccgcacggccgcattccgcgtg
tcggaggtgcgtccgcaggtcaacggcatcgtgcgcaagcgcctcttcgaggaaggcggc
atggtccgcgcagggcaggtgctctacgagatcgagcccggccccttcgaggccgcgcac
gagcaggccgaggcctcgctggccaccgcgcaggccggcatcgcgagcctgcgcagcaag
gccgagcgccatggcgagctcgtcaaggccaatgcggtcagccggcaggagcacgacgag
gcccaggccgcgctggcgcaggcccaggcaggcgtgaaggccgcgcaggcggcggtgaag
gcggcgcgcatcaacctcgaattcacccgcatcaccgcgcccatcgcggggcgcatcggg
cgctcggccatcaccgaaggcgcgctcgtcgcgccggggcaggcgacggcgctggcgacg
atccagcggctcgatccgatctacgtcgacgtcatccagtcgagcctggaactcacgaag
ctcaagcgccgtttcatctcgggcgacatggcgccggccagcacgcgcgtgacgctgcgc
atggaagacggcctgccctatccgcacgaaggcatgctgaagttcaccgaggtcggcgtc
gatgccgcgacgggttcggtcacgctgcgcgcggaatttccgaacccgcaagggctgctg
ctgcccggcatgtacgtgcgcgcacaggtggaggccggtgtggagcgccacgccatcctc
gccccgcagcgcggcgtgggccgcaacgagaaaggcgagccgaccgcgctggtggtcggc
gcgggcgacaaggtcgagctgcggccgctcgaagtgcgcggcgcgtcgggcgaccaatgg
atcgtgagcaaaggcctgcgcgaaggcgaccgcctcgtggtcgacggcctgcagcgcgcg
caccccggcgagaaggtgaagcctgtgccggtgtccctcgaggcggccacggctgccacc
acggccgccgaatga
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