Vibrio paracholerae: SA104470976_01798
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Entry
SA104470976_01798 CDS
T08432
Symbol
ligA_2
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
vpl
Vibrio paracholerae
Pathway
vpl03030
DNA replication
vpl03410
Base excision repair
vpl03420
Nucleotide excision repair
vpl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vpl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SA104470976_01798 (ligA_2)
03410 Base excision repair
SA104470976_01798 (ligA_2)
03420 Nucleotide excision repair
SA104470976_01798 (ligA_2)
03430 Mismatch repair
SA104470976_01798 (ligA_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vpl03032
]
SA104470976_01798 (ligA_2)
03400 DNA repair and recombination proteins [BR:
vpl03400
]
SA104470976_01798 (ligA_2)
Enzymes [BR:
vpl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SA104470976_01798 (ligA_2)
DNA replication proteins [BR:
vpl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SA104470976_01798 (ligA_2)
DNA repair and recombination proteins [BR:
vpl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SA104470976_01798 (ligA_2)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SA104470976_01798 (ligA_2)
MMR (mismatch excision repair)
DNA ligase
SA104470976_01798 (ligA_2)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SA104470976_01798 (ligA_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
HeH
DZR_2
Motif
Other DBs
NCBI-ProteinID:
SYZ81904
LinkDB
All DBs
Position
1:complement(1956066..1958075)
Genome browser
AA seq
669 aa
AA seq
DB search
MSNVEQKLTELRQILHEHGVRYYVEDAPTIPDAEYDRLMRELLELEAAHPELMSSDSPSL
RVGGRPLDAFESVVHEIPMLSLDNAFDDSELESFYRRMTDRLPAVQHSAFCCEPKLDGLA
VSLLYENGVLTRAATRGDGTTGENITENVRTIKAIPLRLQGADFPTRLEVRGEVFMPKAG
FEALNARALKKGEKQFANPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEGRELATSHY
QRFLQLKGWGLPICPETKPVTSLTEVKAFYQDILQRRQSLAYEIDGVVIKVDDIQLQERL
GFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHN
ADEIERLGVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKPIVFPTRCPVCQSDVERVEG
EAVARCSGGLICQAQRKEALKHFVSRKAMDVEGLGDKVIEQLVDREMVSTPADLFRLRAG
ELTILERMGPKSAQNVIDALNKAKQTTLPKFLYALGIREVGEATALNLAQHFLSLEAIQQ
ASLEQFIEVPDVGVVVASHLQAFFAQDRNQQVINELLEQGITWPELTAAPVAVNSALAGK
VVVLTGSFTQLSRNDAKAALQALGAKVTGSVSKNTDMVFAGEAAGSKLAKAAELGIQVFD
EQALIEFLK
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgtctaatgtagaacaaaaattaactgaactaagacaaatcctgcatgaacatggtgtc
cgctattacgtagaagatgcccctaccattccggatgcagaatacgatcgcttaatgcgc
gagctgctggaattggaagctgctcacccagaattgatgagctcagactcgcccagttta
cgagtcggaggacgtccgcttgatgcatttgaatcagtggtgcatgaaattccgatgtta
tcgctcgataacgcctttgatgatagtgaattagaaagtttttatcgccgtatgacggat
aggctcccagcggtacagcacagtgccttttgttgtgagccgaaactggatggcttggcg
gtcagtttattatacgaaaatggtgttctgacccgcgcggcgactcgtggtgatggcacg
acgggcgaaaacatcacggaaaatgtacgtaccattaaagcaatccctttacgtctgcaa
ggcgcagattttccaactcgccttgaagtgcgcggtgaagtgtttatgcctaaagcgggg
tttgaagcacttaacgcacgagcattgaaaaaaggtgaaaagcagtttgctaaccctcgt
aatgctgcggcgggaagcctacgtcaactcgactccaaaattaccgcccaacgtccactg
gctttttatgcttacagcgttggcgttattgaagggcgagagttagcgactagccactat
caacgttttttacaactaaagggctgggggctgccgatttgtccagaaaccaaaccggta
acttctctcaccgaagtcaaagctttttatcaagatattttgcaacgtcgccagtctttg
gcttatgagattgatggcgtcgtcatcaaggttgacgatattcagttgcaagagcgatta
ggtttcgtagctagagcgccgcgctgggcgattgcctataagtttcctgcgcaggaagag
ctcaccttgctcaatgatgttgaatttcaggtaggtcgtacgggcgcgattaccccggtt
gctaagttggagcctgtgtttgtcggtggagttacggtgagtaatgccacattacataat
gccgacgagattgagcgtttgggagtgatggttggagatacggtggtgatccgccgtgct
ggggatgtcatcccacaaatcgtctctgtggtgttagagcgacgccctgagaatgccaaa
cccattgtatttcctactcgttgcccagtgtgtcaatcggatgttgaacgggttgaagga
gaggcggttgctcgatgttccggtggactgatttgccaagctcagcgcaaagaggcattg
aagcattttgtttctcgcaaggccatggatgtagaaggcttaggcgataaagtgattgag
caactggttgaccgagaaatggtgagtacacctgcggatttattccggttaagagcagga
gagctcacgattttggagcgaatgggccccaaatcggcgcagaatgtgattgatgctctc
aataaagcgaagcaaaccacattacctaagtttttatatgcactgggtattcgtgaagtc
ggcgaggctaccgcactcaatttggctcagcactttttaagtttagaagcgatacaacaa
gcgagtttagaacaatttatcgaagttcctgatgtcggcgtggttgtcgcaagccattta
caggccttctttgcgcaagaccgtaaccaacaagtgatcaatgaactgctagaacaaggc
atcacatggccggagcttacggctgcgcctgtggcggtaaactctgctctcgcgggtaaa
gttgttgtgttaaccggcagttttactcaattgtctcgtaatgatgcgaaagccgcacta
caagctttaggtgctaaggtgacggggagcgtatcaaaaaatacggatatggtttttgca
ggagaagcagcaggttctaagctcgccaaagcggctgagttgggtatccaagtcttcgat
gagcaagctctgatcgaatttttgaaataa
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