Vallitalea pronyensis: HZI73_11645
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Entry
HZI73_11645 CDS
T07178
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
vpy
Vallitalea pronyensis
Pathway
vpy03030
DNA replication
vpy03410
Base excision repair
vpy03420
Nucleotide excision repair
vpy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vpy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HZI73_11645 (ligA)
03410 Base excision repair
HZI73_11645 (ligA)
03420 Nucleotide excision repair
HZI73_11645 (ligA)
03430 Mismatch repair
HZI73_11645 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vpy03032
]
HZI73_11645 (ligA)
03400 DNA repair and recombination proteins [BR:
vpy03400
]
HZI73_11645 (ligA)
Enzymes [BR:
vpy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HZI73_11645 (ligA)
DNA replication proteins [BR:
vpy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HZI73_11645 (ligA)
DNA repair and recombination proteins [BR:
vpy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HZI73_11645 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HZI73_11645 (ligA)
MMR (mismatch excision repair)
DNA ligase
HZI73_11645 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HZI73_11645 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
PTCB-BRCT
BRCT_2
HHH_5
DNA_ligase_ZBD
Nlig-Ia
Lar_restr_allev
DUF7575
Motif
Other DBs
NCBI-ProteinID:
QUI22900
UniProt:
A0A8J8SGL6
LinkDB
All DBs
Position
2818543..2820525
Genome browser
AA seq
660 aa
AA seq
DB search
MDTLKEMKVLVAKLNEASKAYYQEDREIMSNYDYDELYDQLVAMEEETGIVLSHSPTSKV
GYTLLSNLPKEKHKIPMLSLDKTKDILALKEWIKDKKGIMSWKLDGLTIVLTYKHGELVK
AVTRGNGEIGEVITNNAKVFKNIPLRIAYDGEMIVRGEAVIKYSDFKVINDQIVDKDKYK
NPRNLCSGTVRQLNNEITAKRNVHYFAFAVVEAEQMDFDDSKIKALQWLESLGFDTVDYQ
IVNQENIGSVVEDFENRIKDNDFGSDGLVVTYDSITYSRSVGQTSKFPRHSIAYKWSDEI
KATKLIEIEWSASRTGAINPIAIFEPIELEGTTVKRASLHNVSILESLELISGDTIEVYK
ANMIIPQVAKNLTKLEYDHQEDEDRHVHIPEACPVCGGETDVKQVNDVKVLYCLNLDCQA
KKLKSFTHFVGRDAMNIEGLSESTLQKFIEQGFIKTFADIYRIEQHKEAIIAMEGLGEKS
YVNLIDSIEKSKHVALPNFIYALGILNVGLSNAKLLCKHYRYDFDAILCATEEELMTIEG
YGGVIAKALVHYFGNETNRQIIDDLLHYIVFQQMEVGSANLVLEGKTFVITGSLERHDNR
KALKERIEHLGGKVTSSVTSKTDYLINNNTESTSSKNKKAKELDVPIINEEAFLELIEGQ
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atggatacgttaaaagaaatgaaagtgttagtggctaagcttaatgaagcaagcaaagcc
tactatcaagaagatagagaaattatgagtaactatgattacgatgaactatatgaccag
cttgttgctatggaagaagagacaggtatcgttcttagtcatagcccaacgtctaaggta
ggttatacgttattatccaatttgcccaaagaaaaacataagattcccatgttatcgtta
gataaaaccaaagacatccttgcgctgaaagagtggattaaggataaaaaaggcatcatg
tcatggaaactagacggtttaaccatcgtcctaacgtataagcatggtgagcttgttaaa
gcagttacgcgaggtaatggagaaataggtgaagtgattaccaataatgccaaagtattt
aagaatataccccttagaattgcttatgatggtgaaatgattgtacgtggtgaagcggtt
atcaagtattcggattttaaagtcattaatgatcagattgttgataaagataaatataag
aatccaagaaatctatgcagcggcacagtaagacagcttaataatgagattacagcaaaa
cgaaatgttcattattttgcatttgcagtggtagaagctgagcaaatggattttgacgat
tcgaagattaaagccttacagtggctagaatcattaggatttgatacagttgattatcag
atagtcaaccaagaaaatatagggtctgttgtggaagattttgagaatcgaattaaagat
aatgattttgggtccgatggtttagtagtaacctatgattcgatcacttattccagaagt
gtagggcaaacatccaagtttccaaggcattccattgcctataagtggagtgatgaaatc
aaagccacaaaactgattgaaattgaatggagcgcttctagaacaggagctattaatcct
atcgctatttttgaacccattgaattagaaggaacaactgtaaagcgagccagtcttcat
aatgtgagtatactggaatcactggagctcattagcggtgataccattgaagtgtacaaa
gcgaacatgattattcctcaagtagccaaaaacttaacgaaattagaatacgatcatcaa
gaggatgaagacagacatgtgcatattccagaagcatgtcctgtttgtggtggggaaaca
gatgttaagcaagtgaatgatgtaaaagttttatattgcttgaatctggattgtcaagcc
aagaaacttaagtccttcacacattttgttggcagggatgccatgaacattgaaggatta
tctgaatcaactttacagaaatttattgaacaaggatttataaagacttttgcagatata
taccgtattgaacaacataaagaagcgattattgccatggaaggactgggagaaaaatct
tatgttaatcttatagattccattgaaaagagtaaacatgtagctttacctaactttatc
tatgcgttaggtatacttaatgtaggtcttagcaatgccaagttattatgtaagcattat
cgctatgattttgatgctatattatgtgccacagaagaagaactgatgaccattgaaggt
tatggtggggttattgcaaaagcgctcgttcattattttggtaacgaaacgaatcgtcaa
atcattgatgatttgcttcattatattgtattccaacagatggaggttggtagcgctaat
cttgtgttagaaggaaagacatttgttattacaggcagcttagagcgacatgataaccgt
aaggctctgaaagagcgtattgaacatcttggtggtaaagtaacgagtagtgtaaccagc
aaaacagattatttgattaataataatacagaatccacgtcatctaagaataaaaaggca
aaagaactggatgtacctattattaatgaagaagcatttttggaattaattgaaggtcaa
tga
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