Veillonella rogosae: OKW85_04465
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Entry
OKW85_04465 CDS
T08601
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
vrg
Veillonella rogosae
Pathway
vrg03030
DNA replication
vrg03410
Base excision repair
vrg03420
Nucleotide excision repair
vrg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vrg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OKW85_04465 (ligA)
03410 Base excision repair
OKW85_04465 (ligA)
03420 Nucleotide excision repair
OKW85_04465 (ligA)
03430 Mismatch repair
OKW85_04465 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vrg03032
]
OKW85_04465 (ligA)
03400 DNA repair and recombination proteins [BR:
vrg03400
]
OKW85_04465 (ligA)
Enzymes [BR:
vrg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
OKW85_04465 (ligA)
DNA replication proteins [BR:
vrg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
OKW85_04465 (ligA)
DNA repair and recombination proteins [BR:
vrg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
OKW85_04465 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OKW85_04465 (ligA)
MMR (mismatch excision repair)
DNA ligase
OKW85_04465 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
OKW85_04465 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH_3
HHH
RNA_ligase
RlmA_N
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
UZG51856
UniProt:
A0AA47AIL2
LinkDB
All DBs
Position
1001272..1003275
Genome browser
AA seq
667 aa
AA seq
DB search
MNPKDRIKELQQELTHAQYLYYVKDAPTMSDFEYDKKYRELVDLETAHPEYIVPSSPTQR
VGMKVEGSFEKVVHGRPMLSLSNVFNADEVRAFASRVEKELGHKPSAYVVELKIDGLAVN
LHYENGMFVRAVTRGDGRIGEDVTANVRTIKSIPLYLENAPEFIEVRGEAYMPHSEFKRI
NEERDEEGLPTFVNPRNAAAGSLRQQDPAITASRNLAFFAYAIGSEEGASIHSQEELLKS
LENFKFSVNPHYRVCQTIDEVIESINYWEEKRHDLPYDTDGMVIKVNSFDDQEALGSTAK
DPKWATAYKYPPEEVETILKDITINVGRTGVLTPTGELESVFVSGTNVSRVTLHNQDFIN
EKDIRIGDHVIIHKAAEIIPEVIRVVPEKRTGSEVPFTIPNTCPVCESPTVRREGEAAVR
CTNKHCPAIEKEQIIHFASRDAMNIDGLGPSIVENLINNKLIANVVDLYHLTVDQLVTMD
RMGKKSAENLVKAIGDSKSRGLDRVLYGLGIRLIGSKAAATIANVVKSMERFMTITKEEL
VAVEEIGPTMADSIVEYRQDPTHVAIIEGLTQAGLKMTVDVIEAAGNQMDGEIVVLTGKL
EVMGRSEAGKILEAHGAKVTGSVSKKTTLVVAGEDSGSKLTKANELGIRVINEEEFVELL
RNLGEIQ
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgaatccgaaagatagaattaaagagttgcaacaagagcttactcatgcacagtattta
tactatgtaaaagatgctcctacgatgagtgactttgaatatgataaaaaatatcgtgag
cttgtagatttagaaacagctcatccagaatatattgtgccatcttctccaacacaacgt
gtaggtatgaaggtggaaggctcctttgaaaaggttgttcatggacgtcctatgttgagt
ctttccaatgtattcaatgctgatgaagttcgagcatttgctagtcgcgtagaaaaggaa
ttaggacataagccatctgcgtatgtagtagagttaaaaattgatggattggctgtcaat
ttacactatgaaaatggcatgtttgtacgtgccgtaacgcgaggtgatggtcgcattggg
gaagatgtaactgctaatgtgcgtactattaaatccattcctttatacctagagaatgcc
cctgagtttatcgaggttcgcggtgaagcgtatatgcctcatagcgaatttaaacgcata
aatgaagaacgtgatgaagaggggttaccaacctttgtgaatcctcgtaatgctgcggca
ggctctttgcgtcagcaagatcctgctattacagcaagtcgtaacttagctttctttgcc
tatgctattggctctgaagaaggtgctagtattcatagtcaagaggaattacttaaaagc
ttagaaaactttaagttctctgtaaatcctcactatcgcgtgtgtcaaactattgatgaa
gttattgaatctatcaattattgggaagaaaaacgccatgacttgccatatgatactgac
ggtatggttattaaagtaaatagctttgatgatcaagaggcactaggcagtactgcaaaa
gatcctaagtgggctactgcctataaatatcctcctgaagaggtagaaaccattcttaag
gatattacgattaatgtaggtcgtacaggcgttctcacccctactggtgagcttgaatct
gtattcgtgtctggtacaaatgtgagtcgtgtaacattacacaatcaagactttatcaat
gaaaaggacatccgcattggtgaccatgtcatcattcacaaggcagcagaaatcattcca
gaagttattcgcgtagttcctgaaaaacgtactggttctgaagtgcctttcacaattcct
aacacatgtccagtatgcgaatctcctacagttcgtcgcgaaggggaagcagctgtacgt
tgtacgaataaacattgtcctgctattgagaaagagcaaatcattcactttgcctctcga
gatgctatgaatatcgacggtttaggtcctagcattgtagaaaacttaatcaataataag
ttgattgctaatgtggtggatttatatcatttaacggtagatcaactagttaccatggac
cgaatgggcaagaaatctgcagagaatttagtaaaagctatcggagattctaaatctcgt
ggtttggaccgcgtattatatggtcttggtattcgtctaattggctctaaagcagctgca
acaattgctaatgtcgtgaaatctatggaacggttcatgactattactaaggaagaactc
gttgcggtggaggagattggtcctacaatggccgatagtatcgtagaatatcgtcaagat
cctactcatgtggctattattgaagggttaacacaagccggacttaagatgactgtagat
gttatagaagctgcaggcaatcaaatggacggggaaatcgttgttctcacaggtaagctt
gaggttatgggccgcagtgaagccggtaaaattcttgaagctcatggggcaaaagttaca
ggctctgtgtcaaagaaaactacacttgttgtagccggtgaagatagcggtagtaagctt
acgaaagccaatgaattggggattcgcgtcataaacgaagaagagtttgtagagctttta
cgcaatctcggagaaatccaatag
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