Vitis riparia (riverbank grape): 117917453
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Entry
117917453 CDS
T07274
Name
(RefSeq) ABC transporter I family member 19-like
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117917453
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vri03019
]
117917453
Messenger RNA biogenesis [BR:
vri03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
117917453
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
ORC-CDC6-like
nSTAND3
NACHT
AAA_15
AAA_28
SMC_N
AAA
AAA_22
AAA_23
AAA_18
AAA_5
AAA_16
AAA_30
AAA_25
SRP54
AAA_33
PduV-EutP
Zeta_toxin
DUF3584
AAA_14
AAA_24
AAA_13
Motif
Other DBs
NCBI-GeneID:
117917453
NCBI-ProteinID:
XP_034689630
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Position
7:complement(23879970..23887709)
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AA seq
291 aa
AA seq
DB search
MAIQSSSSSNSIKVNGLQFAYEGQPPLFLDFNLQISPGSRCLLVGANGSGKTTLLRILAG
KHMVGGRDVVQVLNCSAFHDTHLVCSGDLSYLGGSWSKNIGSAGEVPLQGDFSAEHMIFG
VEGINPVRRDKLVDLLDIDLQWRMHKVSDGQRRRVQICMGLLHPFQVLLLDEVTVDLDVV
ARMDLLEFFKEECDQRGATIVYATHIFDGLETWATDLAYVQEGDLRKIEKLSELDELKTS
ANLLSVVESWLRSETKCEKKKPINPPAQIQRTPSPFDSSPFRSSRHMAYYR
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
atggcgatccagagcagcagcagcagcaacagcatcaaagtcaatggtctgcagttcgct
tacgaaggccaaccacctctcttcttagacttcaacctccaaatatctcctggttctcga
tgccttctcgtcggcgccaacggatccgggaaaaccactttgctgaggattttggcaggg
aagcacatggttggcgggagagatgtggtgcaggtgttgaattgttcggcttttcacgac
acccatctggtttgtagtggcgatttatcctatttggggggatcttggagtaaaaatatt
ggctctgctggagaggttccactccagggagacttctctgccgaacatatgatatttgga
gttgaagggatcaatcctgttagaagagacaagttggttgacctgcttgatattgatctg
caatggagaatgcataaggtatctgatggacagcggcgtcgagtccaaatatgcatgggt
cttcttcatccgttccaggttcttttactagatgaagttacagttgatcttgatgttgtg
gcaaggatggatttacttgaattcttcaaggaagaatgtgatcagcgaggagctacaatt
gtgtatgcaacccatatttttgatgggttggagacatgggcaacagatctggcatatgtc
caagaaggcgatttaaggaagattgagaagttatctgagcttgacgagttgaagacctcc
gccaaccttctttcagtggtggagtcttggctccgttctgaaaccaagtgtgagaaaaag
aaacccataaatcctcctgctcaaatccaaagaacaccctctccttttgattcttcacct
tttagatcatccagacacatggcctactaccgttga
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