Vitis riparia (riverbank grape): 117918322
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Entry
117918322 CDS
T07274
Name
(RefSeq) transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15-like
KO
K12126
phytochrome-interacting factor 3
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri04075
Plant hormone signal transduction
vri04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
117918322
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
117918322
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vri03000
]
117918322
Transcription factors [BR:
vri03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
117918322
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Motif
Pfam:
HLH
bHLH_SAC51
bHLH_NPAS4
bHLH_LHW
bHLH_NCOA
Motif
Other DBs
NCBI-GeneID:
117918322
NCBI-ProteinID:
XP_034690775
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Position
7:25575933..25579458
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AA seq
576 aa
AA seq
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MSDRDFGELVWENGQILTRVLSSTGSHENHRWSSFSLHDSKAQVEVGWDTSMVKRGRLLD
KEFPGHTKMDPHPNYTRQDSLKKDCHTELLAKFSGSILNDEVAYTISGHDEQLVPSADNQ
NFKQGNACNLFSGEPQLTRPKGGQICESSLQQGQASSPYIRSRDGSSKIPVSTSGLSNSM
MRQPEQEQDADPDNRMGSMNFSYFLKLAALDKAKAQNIDAARATTSPGLSRLTESKSDYA
NGTNPFRLRPIGPPTGSVTPKLLPQPVASSLREPLSNGHCKAVGHEVAFGNTASANQIPK
PNSSFAASIVKGKKGKPYAEKSVEPLLASSSTCSREASNYPSYSLKSKCQESEESEHPSQ
SFEEEPRRAEGAMSTRGGSAGSKRNRSAEGHSLSEKRRRDRINKKMRSLQELIPNCKKVD
KISILDEAIDYLKTLQLQVQVMSMGAGMCMAPVMIPAVLQQIQAAHLPHFSPMGMGMGIR
MGMGMGMGMGLGLGLGLGCNPEQFPSPPILGAAALSGIAGTAPQMLGHPGQVLPMSLSSA
PFIPLHAGSLTQSVLVPSVPKDIHPVGHPGSSPSSN
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaccgtgattttggggagcttgtatgggagaatggtcagattcttacaagagtt
ctgtccagtactggatctcatgagaatcacagatggtccagtttttctttacatgattct
aaggctcaagtggaagtaggatgggacacctccatggtaaagagaggaaggttattggac
aaggaatttcctggacataccaagatggatccccatcccaactatacccgtcaggattct
cttaaaaaggactgccatactgaactactggccaaattctcaggttccattctaaacgat
gaggttgcctacaccattagtggtcatgatgaacaacttgttccttcagctgacaatcag
aattttaaacaaggcaatgcatgtaaccttttcagtggagaacctcagcttactagaccc
aaaggtggccaaatatgtgagtcttctttgcaacaagggcaagcttcatctccatatata
agatcaagggacggttcaagtaagatcccagtatcaaccagtggattgtctaactcgatg
atgcggcagccagagcaggagcaggatgctgaccccgataacagaatgggttcgatgaac
ttctcctatttcttaaaacttgcagctctcgataaagccaaggctcagaacattgatgct
gcaagagccacaaccagcccaggcttgtcaagacttacggagtcgaaaagtgactatgct
aatggcaccaaccccttcagattgaggccaattgggcccccaaccggttcagtgaccccc
aaactgttgccacaaccagttgcttcgtctttaagggaaccactctctaatgggcattgt
aaagcagttggtcatgaagttgcctttgggaatactgcatccgctaatcagattcctaag
cccaactcaagcttcgcagcaagcatagtcaagggaaagaagggaaagccttacgctgaa
aaatctgtagaaccattgcttgcatcttcgtctacatgctcacgtgaagcttcaaattat
ccatcctattctttgaagagcaaatgccaagagtctgaggaatcagaacatccaagtcaa
agttttgaagaagaacccagaagggcagaaggagcaatgtctactcgaggaggaagtgca
ggctccaagagaaaccgtagtgcagaaggtcacagcctatctgaaaagaggcgaagagat
aggatcaacaagaagatgcgctcgttacaggaactcatacccaattgcaaaaaggtggac
aagatttcgatactggatgaagccattgattatctgaagacacttcagcttcaagtgcag
gtcatgtcaatgggagctgggatgtgtatggctccagtgatgatacctgctgtattgcaa
cagattcaagcagcacatttgcctcatttctctcccatgggtatgggaatgggcattaga
atgggcatgggcatgggtatgggcatgggattgggattgggattgggattgggctgcaac
ccagaacagttcccaagtccacctattttgggagccgctgctttgtctggaatagcagga
actgcacctcagatgcttgggcacccaggtcaagtgcttcccatgtcattatcaagtgca
cccttcattcctttacatgcagggtcattgacacagtcagttctagtgcccagtgtcccc
aaggatatccacccagtagggcatccgggttcttctccatcttcgaattga
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