Vitis riparia (riverbank grape): 117923415
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Entry
117923415 CDS
T07274
Name
(RefSeq) ATP-dependent helicase rhp16-like isoform X1
KO
K15083
DNA repair protein RAD16
Organism
vri
Vitis riparia (riverbank grape)
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vri03400
]
117923415
DNA repair and recombination proteins [BR:
vri03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NER4 complex
117923415
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
zf-C3HC4_3
zf-C3HC4
zf-RING_5
zf-RING_2
zf-RING_UBOX
Prok-RING_4
zf-P11
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
117923415
NCBI-ProteinID:
XP_034697571
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All DBs
Position
10:22827835..22848394
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AA seq
826 aa
AA seq
DB search
MVRRSDRIASRPPKRFAALENSEEEEEEEGAGEEEREEDNDRRLQDVFYDDKEGVLDHGP
KKGRKKQQSKPKLQWKVLEKENETFLNFCEIKNHLMNFGDEVILEPTEAPPHFLVPLLSH
QKEWLTWALKQEESPFRGGLLADEAGMGKTIQAIALVLAKKPIHRIDAGPCEALPSSSSQ
TAELPETRCTLIICPPIALSHWEKEIVRCTPQGSTKVLVCHGDERNKMVHDLSSYDFVLT
TYQTVFTEYETSCKSWFPVDLASLCRGWRFGIAERESEENLKSSNMEAKCASSGDSTCVC
DGGRGKSSCNNKKKNPKQKKNASTLSSKSSLSITREFSLHSIKWQRIILDEAHSITNETT
KAIFSLKSSYKWALSGTPVQNNFQELYSMIRFLQIFPYAYHFCQYCDWKCIMPELCWTHN
WSFCWWQKYVRKPMRQGGDAKRRAKTLVTQKILKSIMLRRTKESRKELCLPTRIVRVRRC
ALDIREEEYYRTLYEKCRSHFNRYVAARHSWTDWSQIGRLLPRLQKALNHPYLVIYSKGP
VPGRRYRIDLANDDQVCGICHEAPEDKVVACCKHVFCKTCLQSLAPALGLALCPLCSTPY
TGKSAMKKNDSPFTGKSAMKKNDSVMKNNTGSGTTFKDFKSSSLLKRISLNEFQTSTKIE
ALREEIRFMVETDGSAKALVFSDFISFLDLIEYSLLKSEINCVKLVRDNTVDARNALVSR
FFKDPDCKILLTTLEAGGVSLNLTIASYVFLMEPFYTAAELKACDRVYRIGQHKTVRIVK
FVAENTIEERMLELQAAKNQISLSALPGSLNLEEELTVEDLNYFFM
NT seq
2481 nt
NT seq
+upstream
nt +downstream
nt
atggttcgcaggtctgatcgcatcgcttcccgtccacctaagaggtttgctgccctagaa
aactctgaagaagaagaagaggaggagggtgctggcgaagaagaaagggaagaagacaat
gacaggagacttcaagatgttttttatgatgacaaggaaggagtattggatcatggacca
aagaaagggcgaaaaaagcaacagagcaaaccgaaactacaatggaaagttttggaaaaa
gagaatgagacttttctgaatttttgtgaaataaaaaatcatcttatgaatttcggagat
gaagtgattttggaacctactgaggcgcccccgcactttcttgtacctcttctgagccac
caaaaggaatggctgacttgggctttaaagcaggaggagtcaccttttagaggagggctt
cttgcagatgaggctggaatggggaagacaatccaagccattgcgctggttcttgcaaaa
aagccaatccatagaatagacgctggaccatgtgaagcattgccttcatccagttcacag
acagcagaactgccagaaactagatgcacactcattatctgtcctccaattgctctgtct
cattgggagaaggagattgttcgttgtacaccccaagggagcaccaaagtgctggtctgt
catggggatgaaagaaacaagatggttcatgacttatcgagctatgattttgttttgaca
acttatcagaccgtattcacggaatatgagacctcttgtaagtcgtggtttcccgtagat
ctggcttcactctgtagaggatggagatttggaattgctgagagagagtccgaggagaat
ttgaaatcttccaacatggaagcaaaatgtgcaagttcaggagatagtacatgtgtttgt
gatggtggtagagggaagagttcttgcaataataaaaagaagaatcccaagcaaaaaaag
aatgcaagcactttgtcttccaagtcaagtctatcaatcactagggaattctctctgcac
tcaattaagtggcaacggattattctggatgaggctcactccataacaaacgaaactaca
aaagcaattttttctttaaagtcttcatacaaatgggctttaagtggcactccagttcag
aataatttccaagaactttactcaatgatccgctttttgcaaatatttccttatgcatac
cacttttgtcaatattgtgactggaaatgtatcatgcccgaactttgttggactcataat
tggtccttttgctggtggcaaaagtatgttcgtaaaccaatgagacaaggaggtgatgca
aaaagaagagccaagactttggtaacccaaaagattctgaaaagcataatgctaaggcgt
actaaagaaagtagaaaagaactttgtcttccaactagaattgttagagtgagacgatgt
gcattagatattagagaagaagagtattacaggacattatatgaaaaatgtcgatcacat
tttaatagatatgttgcggctagacactcgtggacagattggtctcaaataggtagactt
ttgccacggttgcaaaaggcactcaatcacccatatcttgtgatttattctaaaggtcca
gtaccaggaaggagatataggattgatttggcaaatgatgatcaagtctgtggcatttgt
catgaggctccagaagataaagttgttgcatgttgcaagcatgtcttttgtaagacttgt
ctccagtctcttgctccagcccttggactagctttatgtcccttatgttcaacaccatat
actggtaaatctgcaatgaagaagaatgattctccatttactggtaaatctgcaatgaag
aagaatgattccgtaatgaagaacaacactggttccggaacaacctttaaagactttaaa
tcctcaagtctcttaaagagaatttctctcaatgaatttcagacaagcacaaaaattgaa
gctttgagggaagaaatcaggttcatggtagaaacagatggttctgcaaaagctcttgtt
tttagcgacttcatttctttcttggatttaattgagtactccttgctgaagtctgaaata
aattgtgtaaagctggtcagggataacactgttgatgcaagaaatgcattggtatcaaga
ttcttcaaagacccagattgcaaaatcttactcacaactttggaagctggaggtgtttcc
ttgaatctcaccatcgcatcatatgttttcttgatggaacccttctataccgctgcagag
ttgaaggcttgtgatagagtttatcgaatcggtcagcacaagacagtaagaattgtgaag
tttgtagctgagaacacaatagaggagaggatgctggagctgcaagcagcgaagaaccaa
atttcactgagtgcattacctggttcgctaaatcttgaggaagaactaacagttgaggac
ctgaactacttcttcatgtaa
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