Vitis riparia (riverbank grape): 117925147
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Entry
117925147 CDS
T07274
Name
(RefSeq) 110 kDa U5 small nuclear ribonucleoprotein component CLO
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117925147
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vri03041
]
117925147
Spliceosome [BR:
vri03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
117925147
Complex C
U5 SnRNP specific factors
117925147
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Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
MMR_HSR1
Roc
Ras
EF-G_D2
Motif
Other DBs
NCBI-GeneID:
117925147
NCBI-ProteinID:
XP_034699929
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All DBs
Position
11:13078067..13086809
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AA seq
988 aa
AA seq
DB search
MDDSLYDEFGNYIGPEIESDRESDGDDQDEDIPDKPDEEEMVSDVEDAVAASNGWITASN
DVDMDNQIVLAEDKKYYPTAEEVYGEDVETLVMDEDEQPLEQPIIKPVRNIKFELGVKDS
STYVSTQFLLGLMSNPALVRNVALVGHLQHGKTLFMDMLVEQTHHISTFDSNSEKHMRYT
DTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDTPGHVNFSDEMTAALRLADGAVLI
VDAAEGVMVNTERAIRHAIQERLPIVLVINKVDRLITELKLPPKDAYHKLRHTLELINNH
ISAASSTAGNVQIIDPAAGNVCFASASAGWSFTLQSFAKLYVKLHGVPFDANKFASRLWG
DMYYHPDARVFRKKPPASGGERSFVQFVLEPLYKIYSQVIGEHKKSVESTLAELGVTLSN
AAYKLNVRPLLRLACSSVFGSATGFTDMLVQHIPSAKDAAAKKVDHIYTGPKDSAIYQAM
EDCDSSGPLMVNVTKLYPKSDCSVFDAFGRVYSGEIQTGQTLRVLGEGYSPEDEEDMTVK
EVTKLWVYQARYRIPISKAPPGSWVLIEGVDASIMKTATLCNLDYDEDVYIFRPLLFNTL
PVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDLR
ELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLEKGLAEDIENGVV
SIDWHRKKLGDFFQTKYDWDLLAARSIWAFGPDKQGPNILLDDTLSSEVDKNLLNAVKDS
IVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGTGQIIPTARRVAYSAFLMATP
RLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFET
DLRYHTQGQAFCASVFDHWAIVPGDPLDKSIVLRPLEPAPIQHLAREFMVKTRRRKGMSE
DVSINKFFDEAMVVELAQQAADLHQQMI
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atggatgacagtttatatgatgaatttggaaactacattggaccagaaattgagtctgac
agagaaagtgatggagatgatcaagatgaggacatccctgacaagcctgatgaagaggaa
atggtatctgatgttgaggatgcagttgcagcctctaatgggtggataactgcatctaat
gatgttgacatggacaaccagattgtccttgctgaagacaaaaagtactatcctactgct
gaagaagtctatggtgaagatgttgaaaccttggtaatggatgaagatgagcaacctctt
gaacaaccaataatcaaacctgttaggaatattaagtttgagttgggagtgaaggattcg
tcgacatatgtgtcaacccagtttcttttgggtcttatgtcaaacccagctttggttcgg
aatgttgctctggtcggacatttacagcatggaaagacactattcatggacatgctggtt
gagcaaacacaccatatttcaacatttgattcaaatagtgagaagcacatgagatacaca
gatacgaggattgatgagcaagagagaaggatatcaattaaggctgttcccatgtcactt
gttcttgaggatagcaattcaaaatcttatctttgtaacatcatggacactccaggtcat
gtaaatttctctgatgagatgactgctgctctcagacttgccgatggtgctgtcttgatt
gtggatgctgctgaaggagtaatggtaaatacagaaagggctatacgccatgcaatccaa
gagcgccttcctattgtacttgtaatcaataaggttgacaggctgatcactgaactcaaa
ttgcccccaaaggatgcttatcataagctaaggcatactctggaactcatcaataatcac
atatctgctgcctcatcaactgcaggaaatgtccaaatcatagacccggctgctggaaat
gtctgttttgctagtgctagtgcaggatggtcttttactttgcaatcatttgctaaacta
tatgtcaaactccatggcgtcccatttgatgccaataagtttgcatctcggctttgggga
gatatgtattatcatcctgatgctagggttttcaggaagaaaccgcctgcaagtggaggg
gaaagatcatttgtccagtttgtgcttgagcccctctacaagatatatagccaagtaatt
ggagaacataagaagagtgtggagagtacccttgcagaactgggtgtcactctcagcaat
gcagcctacaaactaaatgttaggcctttgctgaggttggcctgtagctcagtctttggt
tcagcgacaggtttcactgatatgctggttcagcatattccttctgccaaagatgctgca
gctaagaaggttgatcatatttatactggacccaaagattctgcaatataccaggccatg
gaagattgtgattcttctggtcctctaatggttaatgtgactaaactgtatccaaagtct
gattgcagtgtttttgatgcttttggtagggtttatagtggtgaaatccaaacagggcag
actttacgtgtgctgggagaaggctattcaccagaagacgaagaggatatgacagtaaag
gaagttacaaaattatgggtttatcaagctcgttacagaatacccataagcaaggctcct
cctggttcttgggttctcattgaaggtgtggatgcttcaattatgaagactgccacactt
tgtaatttggattatgatgaggatgtatacatatttcggcctcttctgtttaatactctt
ccagtagttaaaacagctactgagcctttaaatccaagtgagttgcccaaaatggtggag
ggtcttaggaagatcagtaagagctatcctttagcaattactaaagttgaggagtctgga
gaacacactattttaggtactggggagttgtatttggattctatcatgaaggaccttaga
gaactgtattctgaagttgaagtcaaggtggcagatcctgttgtatcattttgtgaaact
gtggtggagtcttcatcaatgaaatgttttgctgaaacacccaacaagaagaataaaata
accatgattgcagagccattggagaaaggactcgcggaggatatcgagaatggtgttgta
agcattgattggcatcgaaagaaacttggtgacttttttcaaacaaaatatgactgggat
ttgctggctgcaaggtccatatgggcatttgggccagataagcaggggcctaacattttg
ttagatgatactctctctagtgaagttgataagaacttactaaatgctgtcaaagattcc
attgttcaaggatttcaatggggtgcccgagaaggacccctgtgtgatgagcccatcaga
aatgttaagttcaaaatagtcgatgcaaggattgcacctgagcccttgcatcgaggaact
ggtcagatcattcctacagctcggcgggtggcctactctgcattccttatggcaactcca
cgacttatggaacctgtatactacgtggagatacaaacaccaatagactgtgtctctgca
atctacactgtcttatctcgcaggcgtgggcatgttacagctgatgttcctcaaccaggg
accccagcctatattgttaaggcatttttgccagtgatagaatcatttgggtttgagaca
gacttgaggtaccatactcaagggcaagcgttttgcgcctctgtgtttgatcactgggct
atagttccaggggaccctcttgataagagtattgtcctgcggccactggaacctgcaccg
attcagcaccttgctcgtgagttcatggttaagacaaggcgtagaaagggtatgagtgaa
gatgtaagcatcaataaattcttcgacgaggctatggtggtggagctagcccagcaggca
gccgaccttcatcagcaaatgatttaa
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