Vitis riparia (riverbank grape): 117930125
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Entry
117930125 CDS
T07274
Name
(RefSeq) 5'-3' exoribonuclease 4
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
117930125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vri03019
]
117930125
Messenger RNA biogenesis [BR:
vri03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
117930125
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
117930125
NCBI-ProteinID:
XP_034706488
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All DBs
Position
14:complement(21802594..21884136)
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AA seq
975 aa
AA seq
DB search
MGVPAFYRWLADRYPLAVMDVVEEEPSEDGAEIDVSRPNPNGMEFDNLYLDMNGIIHPCF
HPDGKPAPTTYDDVFKSIFDYIDHLFSLVRPRRLLYMAIDGVAPRAKMNQQRSRRFRAAK
DAAEAEAEEERLRKEFEVEGKMLSPKEKPETSDSNVITPGTKFMAVLSVALQYYIHSRLN
RNPGWCSTKVILSDSNVPGEGEHKIMSYIRSQRNLLGFNPNTRHCLYGLDADLIMLSLAT
HEVHFSILREMITPPGQQEKCYLCGQVGHLAAECRGIEVVDDTPIHKKKYQFLNIWVLRE
YLQYDLEILNPPFEINFERLLDDFVFLCFFVGNDFLPHMPTLEIREGAINLLMHVYRREF
SAMGGYLTDAGEVLLDRVEHFIESVAVYEDQIFQKRTRIQQALENNEEMKLRTRREASEE
PRASVEDKVKLGEPGYKERYYTEKFNLSNPEEIDKVRKEIVMKYVEGLCWVCRYYYQGVC
SWQWYYPFHYAPFASDLKDLVDLEITFFLGEPFKPFDQLMGTLPAASASSLPENYRKLMT
DQSSPILDFYPSDIEIDMNGKRYAWQGVAKLPFIDEEKLLAETKKLEVTLTVEEQVRNSV
MFDLLYVHAVHPLATQIIYYYHFYQSSPPLARVIWPIDINASGGMNGYLWLCERNGWRSE
FPSSISGLQNIEHNQVFNVTYINPPHHKHVPEPLMGVVMPEKVLRPFDIKPLPVLWHEDN
GGRRQQGRERPQVPRAISGPLLGEAAHRLLKNTLNIKPNNTSSGMLLQTPYRNMPSNYVV
NRPRPAGPSGYEKGFNGDSNYYYGHYDNPRGALSIPRFPPSPNNMQGNRQNFRVQDRSTF
QDQYRNSRTGMSALTTEQNFRVQHRPPYQDQFSELSTGMSTLTIEEGVRTRQPIVRPSRM
PSAADTLNTNNQFVQNKSPPAPPSKWIERHATGNAGMNVRQQDNVSAGTYEKPIKKVYQV
KMQHMQDSSDPGSQQ
NT seq
2928 nt
NT seq
+upstream
nt +downstream
nt
atgggggttccagcgttttaccggtggctcgcagatcggtaccctctggccgttatggac
gtggtcgaagaagagccgtcggaggatggggctgagattgatgtctccagacctaaccct
aacggcatggagtttgataatctttacttggacatgaatgggatcattcacccttgtttt
catcccgacggcaagcctgcgcctaccacctatgatgatgtgtttaaatcgatatttgat
tacattgaccacctattttcattggttcgcccaagaaggcttctttatatggctattgat
ggggtcgcaccaagagctaaaatgaatcagcaacgctctcggcgcttcagagctgcaaaa
gatgctgctgaggcagaagctgaagaggaaaggttgaggaaagagtttgaggtggaggga
aaaatgctgtctcccaaagaaaagcctgaaacatctgactcaaatgtcatcactcctggc
actaaatttatggctgttctctcagtagcacttcaatattatatacactctaggttgaat
cgcaatcctggctggtgctcaacgaaggttattctttctgattcgaatgttccgggtgag
ggagaacacaaaattatgtcctacattcggtcacagcgtaatcttctgggttttaatcca
aacactcgtcattgtttatatggtttggatgcagatctgattatgctatctttagctaca
catgaggttcatttttcgattttgagagagatgatcactccgcctgggcaacaggagaaa
tgttatctttgtggtcaagttggtcatctggctgctgaatgtcgtggtattgaagtggta
gatgacactccgattcacaaaaaaaaatatcagttcctgaacatatgggtactacgagaa
tatttgcaatatgatttggagattctcaaccctccatttgagattaactttgaacgtctg
ctggatgattttgtatttctctgtttctttgtgggcaatgattttctcccacatatgcct
acattggaaatccgggagggtgctataaatttgctgatgcatgtctataggcgtgagttt
tctgctatgggtggatatcttactgatgcgggtgaggtcttgctggatagagtagaacat
tttattgagtcagttgcagtttatgaagaccaaatatttcagaagcgaactcgtatacaa
caggcactggagaataatgaagagatgaagcttagaacaaggagagaggcttctgaagag
ccacgggcttcagttgaagacaaggtgaaattgggggagcctggatacaaagaaagatat
tatactgaaaaatttaatttatccaatccagaggagattgataaagttaggaaagaaata
gttatgaagtacgttgaaggtttatgttgggtttgccggtattactaccaaggtgtttgt
tcttggcaatggtattatccattccactatgctccttttgcttctgatcttaaagatctt
gttgatttggagattacatttttcttgggagagccatttaagccatttgatcagctcatg
ggaactctaccagctgcaagtgcaagttctcttcctgaaaattacaggaaattgatgact
gatcaatcatcacctatccttgacttctatccttctgatattgaaattgacatgaatggc
aagcgctatgcatggcagggtgttgccaagttgccattcattgatgaggagaaattactt
gctgaaacaaagaagctagaagtcactttaacggtggaagagcaagtccggaatagtgtg
atgtttgatttgctatatgtccatgctgttcatcctttagctacacaaattatttattac
taccatttttatcagagttcacctccacttgcaagagttatatggcctattgacataaat
gccagtggtggaatgaatggatacctatggttatgtgagaggaatggttggagatcagaa
tttccttcttccattagtggattgcaaaatattgaacataaccaagtcttcaatgttacc
tatattaatcctccacatcacaagcatgttccggaacctctcatgggagtggtcatgcct
gaaaaagttttaagacctttcgacataaagcccttgcctgtgttgtggcatgaggacaat
ggtggtcggcgccagcaaggcagagagaggccacaagtgccacgggcaatatctggtcct
ctattgggagaagcagcacaccggctacttaagaacacactgaatatcaaacccaacaac
acatcttctggaatgttgttacaaacaccatatcgtaatatgccaagcaattatgtagta
aaccggccaaggccagctggaccctctgggtatgagaagggcttcaatggagactcaaat
tattactatggacattatgacaacccccgaggtgcactcagtatccctcggttccccccc
tctcccaacaatatgcaaggcaacaggcagaatttcagggtgcaagatagatcaacattt
caggaccagtatcgcaactcaaggacaggaatgtctgctttgacaacagagcagaatttc
agagttcaacatagaccaccttatcaagaccagttctctgaattaagtacgggaatgtct
actttgactatagaagaaggggttagaaccaggcaacctatagtaaggccatcaaggatg
ccaagtgcagcagacacactgaacactaataaccagtttgtacagaacaaaagtcctcca
gcaccaccctcaaagtggatagagagacatgcaactggaaatgctggaatgaatgttaga
caacaggacaatgtgtcagctggaacatatgagaaacctataaaaaaggtttatcaggtt
aagatgcaacacatgcaggattcatctgatcctggatcccagcagtga
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