Vreelandella sp. SM1641: V8F66_03755
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Entry
V8F66_03755 CDS
T11229
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
vrs Vreelandella sp. SM1641
Pathway
vrs03030
DNA replication
vrs03410
Base excision repair
vrs03420
Nucleotide excision repair
vrs03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vrs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
V8F66_03755 (ligA)
03410 Base excision repair
V8F66_03755 (ligA)
03420 Nucleotide excision repair
V8F66_03755 (ligA)
03430 Mismatch repair
V8F66_03755 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vrs03032
]
V8F66_03755 (ligA)
03400 DNA repair and recombination proteins [BR:
vrs03400
]
V8F66_03755 (ligA)
Enzymes [BR:
vrs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
V8F66_03755 (ligA)
DNA replication proteins [BR:
vrs03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
V8F66_03755 (ligA)
DNA repair and recombination proteins [BR:
vrs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
V8F66_03755 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
V8F66_03755 (ligA)
MMR (mismatch excision repair)
DNA ligase
V8F66_03755 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
V8F66_03755 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
XBY59609
UniProt:
A0AAU7XP48
LinkDB
All DBs
Position
786690..788723
Genome browser
AA seq
677 aa
AA seq
DB search
MSKSDSQPLEEITQLRAALDEANYRYYVLDDPTLTDADYDRQLQRLQQLEASHPELITSD
SPTQRVGAAPADGFPSVAHAIPMLSLDNAFSREDIHAFAERVAERLECSADEVEFTCEPK
LDGAAVSLVFEQGVLVSGATRGDGRTGEGITSNLRTLRSVPLKLMGKNVPELLEVRGEVI
MRHAGFEALNERAREEGNKVFANPRNAAAGSLRQLDPRITAKRPLEFHAYQAARLEPDLG
DTTHSELMARLSTLGFRASAELKVVKGPQAVADYCEQLGEKRDALGFDIDGVVIKVNDLR
YQRELGFVARAPRWAVAFKYPAQEEVTTLNDVEFQVGRTGAITPVARLEPVTVAGVTVSN
ATLHNADEITRLDVMIGDTVSIRRAGDVIPQVVRVHVEQRPADARAIVFPEHCPVCGSDI
ERVDGEAVARCSGGLYCAAQRKEALKHFASRKALDIDGLGEKLIVQLVDLDWVKTPADLF
HLSVEQLKSLPRMGEKSANNLVNSLEKAKSTTLARFIYALGIREVGEATAANLANHFGTL
ETVQTAELAALEAVNDVGPIVAAHVHTFFRQPHNQETIAALIDAGVTWQEAVVTQGPTPL
EGQTWVLTGSLESMTRDEGKARLQALGAKVAGSVSKKTTCLVAGEAAGSKLTKAEQMGVE
VIDEATFMERLAEWEQS
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgagcaagtctgattctcaaccgttggaagagattacccagctgcgggccgccctggat
gaggcaaactaccgctattacgtgctggatgatcccacccttaccgatgccgactacgac
cgtcagctgcaacgtttacagcaattggaagccagccatccagaactgatcaccagcgat
tcacccacccagcgcgtaggcgccgccccagccgatggctttccatcagtggcgcacgca
atccctatgctgtcgttggataatgcctttagccgcgaggatatccatgcctttgccgag
cgagtggcggaacgcttggagtgcagtgcagacgaggttgagtttacctgcgagcctaag
ctggatggcgcggcggtgtcgctggtttttgagcagggcgtgctggtgagcggcgccacc
cggggagatgggcgtaccggtgaaggcatcacctctaacctgcgcactttgcgttcggtg
ccgttaaagctgatgggcaaaaacgtacccgagctgctagaagtgcgtggtgaagtgatt
atgcgccatgcagggtttgaggcgttgaacgagcgcgctcgggaagagggcaacaaggta
tttgccaatccgcgcaatgcggcggcaggcagcctgcgtcagctcgacccgcgtattacc
gcgaaacgtccacttgaatttcacgcctatcaggccgcccgcttggaacctgatttaggc
gataccacccacagcgaactaatggcacggttatccacgttaggatttcgcgccagtgca
gagctaaaagttgtcaaaggcccacaagctgtcgccgactactgcgagcagttgggcgaa
aaacgcgatgcgcttggctttgatatcgacggcgtggtgatcaaggtgaatgacctgcgc
taccagcgtgagctgggctttgtcgcccgcgcgccacgttgggcggtggcgtttaagtat
cctgctcaggaagaggtcaccacgcttaacgatgtcgagttccaggttggccgtaccggg
gcaatcacgccggtggcgcggcttgaaccggtcaccgtggcaggcgtgacggtctccaat
gccacgctgcataacgccgatgaaatcacccgcctggacgtgatgattggtgatacagtc
tccatccgccgagctggcgacgttatccctcaggtagttagagtgcatgttgaacagcgg
cctgcggatgccagggccattgtttttcctgaacactgcccggtatgtgggtcggatatt
gagcgcgttgatggcgaagcggtggcgcgctgttccggcggcctctactgcgccgcccag
cgcaaagaggcgttgaagcacttcgccagccgcaaggcgctggatatcgacggcctgggc
gagaaactgattgtgcaactggtcgacttggattgggtcaaaaccccggcggacctgttt
catttgagtgttgagcagctaaaaagcctgccgcggatgggagagaagtcagccaataat
ttggtcaactcgcttgaaaaagccaaatcgaccaccctggcgcggtttatttacgcgctg
gggatccgtgaagtaggcgaagccacagcggccaaccttgctaatcactttggcacgctt
gaaaccgtccaaacggcggaactggcagcgctggaagcagtcaacgatgtcggcccgatt
gtcgccgcccacgtgcatacttttttccgccagccacacaaccaggaaaccattgccgcg
ctgattgatgccggagttacctggcaggaagccgtcgttacccaaggcccaacgccgctg
gaaggacagacctgggtattgacgggctcgcttgaaagtatgacccgcgatgagggcaag
gcacgcttgcaggcattaggggcgaaggtagcgggcagcgtgtcgaagaagactacctgt
ctcgtcgctggcgaagccgcaggcagtaagctaaccaaagccgagcagatgggtgtagaa
gtgatcgatgaagcgacctttatggaacgtttggcagagtgggagcagagttaa
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