Vibrio scophthalmi: VSVS12_00935
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Entry
VSVS12_00935 CDS
T04650
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+))
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
vsc
Vibrio scophthalmi
Pathway
vsc03030
DNA replication
vsc03410
Base excision repair
vsc03420
Nucleotide excision repair
vsc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vsc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VSVS12_00935 (ligA)
03410 Base excision repair
VSVS12_00935 (ligA)
03420 Nucleotide excision repair
VSVS12_00935 (ligA)
03430 Mismatch repair
VSVS12_00935 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vsc03032
]
VSVS12_00935 (ligA)
03400 DNA repair and recombination proteins [BR:
vsc03400
]
VSVS12_00935 (ligA)
Enzymes [BR:
vsc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
VSVS12_00935 (ligA)
DNA replication proteins [BR:
vsc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
VSVS12_00935 (ligA)
DNA repair and recombination proteins [BR:
vsc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
VSVS12_00935 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
VSVS12_00935 (ligA)
MMR (mismatch excision repair)
DNA ligase
VSVS12_00935 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
VSVS12_00935 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
DNA_pol_lambd_f
5_3_exonuc
DZR_2
Motif
Other DBs
NCBI-ProteinID:
ANS84723
LinkDB
All DBs
Position
1:996537..998546
Genome browser
AA seq
669 aa
AA seq
DB search
MSTEIQQKLEQLRETLHYHAVRYYVEDSPEIPDAEYDRLMRELLDIEAQHPDLVTIDSPS
QRVGGKPLDGFESVAHEIPMLSLDNAFDDAELESFHKRMADRLPAARFDLFCCEPKLDGL
AISLLYVDGVLVQAATRGDGTTGENVTENVRTISAIPLKLRGEGWPNRIEVRGEVFMPKA
GFDKLNQIALKKGEKPFVNPRNAAAGSLRQLDSRITATRPLSFYAYSVGVVEGEPLSLSH
YQRFLQLKSLGLPMCPETKLVNSLEDVKAYYHDILTRRDALAYEIDGVVIKVDDVTLQER
LGFVARAPRWAIAYKFPAQEEITILNDVEFQVGRTGAITPVAKLEPIFVGGVTVSNATLH
NADEIARLAVKIGDSVIIRRAGDVIPQVVSVVLDRRPDSAREIVFPAQCPVCHSAVERVE
GEAVARCTGGLVCQAQRKEALKHFVSRKALDVDGLGEKVIEQLVDKEMVATPADLFKLSA
GVITVLDRMGPKSAQNVVDALVKSKQTTLPRFLYSLGIREVGEATAANLAMHFKSLDAVM
AATHEQLIEVQDVGVIVASHVTAFFAQEKNLQVITELQQQGIDWPAIEERYESVPQPLAG
KTVVLTGSLSQLSRSDAKAALQNLGAKVAGSVSKKTDILFVGENAGSKLAKAQELGIEVQ
TEQDLINLM
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacagaaatccaacaaaaactcgaacaactacgcgaaacgcttcattaccatgcc
gtccgttactacgtagaagacagccccgagatcccagatgcagaatatgatcgtctgatg
cgtgaattgctcgacattgaagcgcaacacccagatttagtgacgattgactcgccgagt
cagcgtgttggcggcaaaccgcttgatggattcgaatcggtcgcacatgaaattccaatg
ctgtcgttggataacgcttttgatgatgcagaacttgaaagctttcacaaaagaatggct
gaccgcctacccgcagcgcgtttcgatttgttttgctgcgagcctaaattagatggcttg
gcaataagcttgctctatgttgatggtgttttggtacaagccgccacgcgtggtgatggc
acgacgggagagaatgtaacggaaaacgttcgtaccatcagcgcgataccattaaaacta
cgcggtgaaggttggccgaatcgcattgaagtgcgtggtgaagtgtttatgcctaaggca
ggctttgacaagttaaaccaaatcgctctcaaaaaaggtgaaaaaccgtttgttaacccg
cgtaacgctgcggcaggcagtttacgtcaattagattcacgcattaccgcaactcgtcca
ctgagcttttatgcctacagtgtcggcgtggtagaaggcgaaccattgtccttgagtcat
taccaacgctttttgcaattgaaaagcttgggcctgccaatgtgcccggaaaccaagctg
gttaattctttagaagacgtaaaggcttattatcacgatatcttgactcgccgtgatgcg
ctggcgtacgagattgatggtgtcgtgattaaagttgatgacgtgactttgcaagagcgt
cttggttttgttgcccgcgcgccacgctgggcgattgcttataaatttccggcgcaagaa
gaaatcaccattctaaatgacgtagagtttcaagttggacgaactggcgcgatcacgccg
gtcgcgaaactagagcctattttcgtcggtggtgtgaccgtgagtaatgccacgttacat
aacgccgatgagattgctcgtttagcggtgaagattggtgatagcgtgattatccgtcgt
gctggcgatgtgatcccgcaggtggtgtcagtggtgctggatcgtcgccctgattctgct
cgtgaaattgtcttccctgcacaatgcccagtatgtcactcagcggttgagcgggtcgaa
ggtgaagcggtagcgcgctgtactggcggtttagtttgccaggcgcagcgtaaagaggcg
cttaagcactttgtatcgcgcaaagcgcttgatgtggatggtctaggtgaaaaggttatc
gaacaactggtcgataaagagatggttgccactccggctgatctgtttaagctcagtgca
ggcgtgattacggttttagatcgtatggggcctaaatcggcgcagaatgtcgttgatgca
ttagttaaatcgaaacaaaccacattacctcgctttttatactcactcggtattcgtgaa
gtgggcgaggcgacggctgcgaaccttgccatgcactttaaatcattggacgcggtaatg
gctgccacacatgagcagttgatcgaagttcaagatgttggcgtgattgtggcaagtcat
gtgaccgctttcttcgcccaagagaagaacctgcaagtgatcactgaattgcagcagcag
gggattgattggccagctattgaagagcgttatgaaagtgtgccgcaaccgttagccggt
aaaactgtggtgctaaccggatcactgtcacaactgtcgcgtagcgatgcaaaagcggca
ttgcagaatttaggtgccaaagtggccggtagcgtatcgaaaaaaaccgatatcttattt
gttggtgaaaacgcgggttctaaattagccaaagcacaagagttggggatagaggtacaa
actgagcaagatttgatcaacttaatgtaa
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