Virgibacillus salarius: PD280_01035
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Entry
PD280_01035 CDS
T10331
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
vss Virgibacillus salarius
Pathway
vss03030
DNA replication
vss03410
Base excision repair
vss03420
Nucleotide excision repair
vss03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vss00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PD280_01035 (ligA)
03410 Base excision repair
PD280_01035 (ligA)
03420 Nucleotide excision repair
PD280_01035 (ligA)
03430 Mismatch repair
PD280_01035 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vss03032
]
PD280_01035 (ligA)
03400 DNA repair and recombination proteins [BR:
vss03400
]
PD280_01035 (ligA)
Enzymes [BR:
vss01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PD280_01035 (ligA)
DNA replication proteins [BR:
vss03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PD280_01035 (ligA)
DNA repair and recombination proteins [BR:
vss03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PD280_01035 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PD280_01035 (ligA)
MMR (mismatch excision repair)
DNA ligase
PD280_01035 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PD280_01035 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
RNA_pol_A_CTD
PTCB-BRCT
RNA_ligase
HHH
Nlig-Ia
Zn_ribbon_NUD
5_3_exonuc
BRCT_2
DUF1322
Motif
Other DBs
NCBI-ProteinID:
WBX80498
LinkDB
All DBs
Position
complement(214353..216365)
Genome browser
AA seq
670 aa
AA seq
DB search
MDRQQAQDKVKQLTEILNHYNYEYHVLDNPSVPDVVYDQKMQELRKLEEAFPDLVTAESP
TQRVGGEPLDTFQKVQHKIPMLSLGNAFNEQDLRDFARRASQGTDEPVQFVCELKIDGLA
VSLTYENGKLVRGATRGDGTTGEDITSNLRTIRSIPLSIKETETIEVRGEAFMPHQSFLA
LNKEKEANEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFLYGVGVWENSKLTTHSERLE
RLKELGLKTNPEWKKCDTIDEVLEYVSYWTNERPNLNYEIDGIVIKVNNLKQQEELGFTA
KSPRWAIAYKFPAEEAVTKLTDIELSVGRTGVVTPTAILNPVKVAGTTVQRASLHNEDLI
REQDIRIGDTVVIKKAGDIIPKVVRAMVEARTGSEQEFHMPAECPACGSELVRLEEEVAL
RCINPSCPAQLKEGLIHFVSRNAMNIDGLGEKVIIQLFQENLVHTIADIYRLKKEELLEL
ERMGEKSVDNLLRAIEVSKENSLERLLFGLGIRFVGSKAAKTLAMEFETMDNLQKVTYED
LLEINEIGDKMADSIAQYFQEQQVIDLLNELRDLGINMTYLGTKPSTQTEESIFHGKTIV
LTGKMEYFTRPQAKEIIEGLGGSVTGSVSKKTDILIAGEDAGSKLVKAQKLEVDVWNEEQ
FQQAIENGGV
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atggatcgacaacaggcacaagataaggttaagcaattaaccgaaattttaaatcactat
aattatgaatatcacgtgctggataacccttccgttccagatgtggtctatgaccagaaa
atgcaggaactgcgaaaacttgaagaggcttttccagacctggtaactgccgaatctcca
acgcaaagagtgggcggagaaccgttagacacatttcaaaaagttcagcataagattccg
atgttaagcttgggaaatgcgtttaatgaacaggatttgcgagattttgcacgacgcgca
agtcagggaacagatgaaccagttcaatttgtctgtgaattaaaaattgatggtttagct
gtttcgctgacgtatgaaaatggaaaattggtacgtggagctacgcgtggggatggtacg
acaggtgaggatattactagtaatctgcgaaccattcgtagtatcccactatccattaaa
gaaacggaaaccattgaagttcgtggtgaagcatttatgcctcatcaatcgtttttagcc
ttaaataaggaaaaagaagcaaatgaggaagagccctttgcgaatcctcgtaatgcggca
gcaggttctttacggcagcttgacccaaagattgctgctaagcgaaatttggacatcttt
ctctatggggttggtgtgtgggaaaatagtaaactaaccacacatagtgagcgtttggaa
cgactgaaggagttagggctgaaaacaaacccagagtggaaaaaatgcgataccattgat
gaagttttagagtatgtttcctattggacgaatgaacgtccaaatttaaattatgaaatc
gatgggatagttataaaagtaaataatctcaagcaacaagaggagttaggttttactgcg
aaaagtccacgctgggcaattgcttataaatttccagcagaagaagcagtaacaaaatta
acggatattgaattaagtgtagggagaactggcgttgtcacaccaacggctattctcaac
cctgtaaaagtagctggaactaccgtacaacgagcttccttgcacaatgaggatcttatc
cgagaacaggatatccgtattggcgataccgtagtgattaaaaaagctggtgatattatc
ccgaaagtggtacgagcgatggtcgaagcgcgtactggctcagagcaggaattccatatg
ccagctgaatgtccagcctgtgggagtgaattagttagattagaagaggaagttgcctta
cgttgtattaatcctagttgtcctgcgcaattaaaggaagggcttattcactttgtttca
cgtaatgctatgaatattgatggtttaggagagaaagtaattattcaactttttcaggag
aaccttgtgcatacaatagctgatatttaccgtctgaaaaaagaagaattgcttgagtta
gaacgtatgggcgaaaagtcagttgataatttattacgtgctattgaagtatcaaaggag
aattcactggagcgcctgctgtttggattaggtattcgatttgtcggatcaaaggctgca
aagacattagcaatggaatttgaaacgatggataacctgcaaaaagtaacatatgaagac
ctattagaaataaatgaaattggagataaaatggctgattcaatcgcgcaatattttcaa
gagcagcaagttattgatctcttaaatgagctaagagatctgggaattaacatgacgtat
ttagggacgaagccttctacacaaacagaggaaagcatatttcatgggaagacgattgta
ttaacagggaaaatggagtattttactcggcctcaagcaaaggaaattattgaggggtta
ggtgggtctgttactggcagtgttagtaaaaagacggatatcctaatcgcgggagaagat
gccggatcgaagctggtgaaagcccagaagcttgaagttgacgtatggaacgaagaacaa
tttcagcaagctattgaaaatggaggagtgtaa
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integrated database retrieval system
