Vitreoscilla stercoraria: LVJ81_00480
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Entry
LVJ81_00480 CDS
T08153
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
vst
Vitreoscilla stercoraria
Pathway
vst03030
DNA replication
vst03410
Base excision repair
vst03420
Nucleotide excision repair
vst03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vst00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LVJ81_00480 (ligA)
03410 Base excision repair
LVJ81_00480 (ligA)
03420 Nucleotide excision repair
LVJ81_00480 (ligA)
03430 Mismatch repair
LVJ81_00480 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vst03032
]
LVJ81_00480 (ligA)
03400 DNA repair and recombination proteins [BR:
vst03400
]
LVJ81_00480 (ligA)
Enzymes [BR:
vst01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LVJ81_00480 (ligA)
DNA replication proteins [BR:
vst03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LVJ81_00480 (ligA)
DNA repair and recombination proteins [BR:
vst03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LVJ81_00480 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LVJ81_00480 (ligA)
MMR (mismatch excision repair)
DNA ligase
LVJ81_00480 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LVJ81_00480 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
BRCT_2
P22_AR_C
Motif
Other DBs
NCBI-ProteinID:
UOO92560
UniProt:
A0ABY4E9X4
LinkDB
All DBs
Position
101352..103760
Genome browser
AA seq
802 aa
AA seq
DB search
MNHESIQQQMDELIHLLERYNREYYEQDNPSVSDADYDAIFLQLQALEAAYPEFMRPESP
TQRVGGQALSQFDSVVHQVPMLSLNNAFSPIDSQGVYDHSQMQAFDERVKSGLNLAASPD
YLIEPKFDGLALSLIYENGILVQAATRGDGLSGENVTQNVKTIRSIPLKLTTDTPPRLLE
VRGEVLMFKADFDALNERQAAEGGKLFANPRNAAAGSLRQLDAKIAAQRPLDFFAYSIAQ
LDEAIQPLGHQQELMFLERLGIPTPPSDCCLLSDNMADINAFYAQMALKRPELPFDIDGM
VIKVNSLALQQRLGFVSRAPRFAIAHKFPAEEAPTLVEAIDVQIGRTGAVTPVARLVPVR
VGGVTVTNATLHNEGEAQRKDVRVGDTVMVRRAGDVIPEVVRVVFEKRPMQDAPSQTDLF
ATESLPQSPRYQLPTVCPVCGSDIVKEGDEAVARCTGGMLCQAQRAQALIHFASRTAMDI
EGLGSRQIEQLVELDLVHEFADLYRLDIPTLQRLKQIDDEAENNKRETPIKWAQNILLGL
EASRQPLLSRLIFALGIRHVGERTAKTLAQYFGQLALIRSMPAPLLACLPDIGEVVAKSI
AQYFANAKNQQQIDDLLNVGVLPQENAPHVQLLQVLSMSEWLMHLPDLRMSAKKVAQLLS
EAATFHALREQEVSDVAWLTWRSKAENLQLLQDIENALQACQVQTETLLQDASTDMAAQA
VNEAVAGKTFVLTGTLQHKRDEVQAWLEAAGAKVSGSVSKKTDFVVAGEAAGSKLDKANA
LGVAVLNEQQLLILLGKSDEKN
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atgaatcatgaatcaattcaacagcagatggatgagttgattcatttgctagagcgttac
aatcgcgagtattacgagcaagacaatcccagtgtcagcgatgccgattacgatgcgata
tttttgcaattacaagctttagaagcggcgtatcctgaatttatgcgtcctgaaagcccc
acgcaacgtgtgggcggtcaagctttgagtcaatttgacagtgtggtgcaccaagtgccg
atgttgagcttgaacaatgctttttctcccatagacagccaaggcgtgtatgaccacagt
cagatgcaagcatttgatgagcgggtcaaaagcggcctgaatctggctgcttctcctgat
tatttgattgagcctaaattcgatggtttggctttaagcttgatttacgaaaacggtatt
ttggtacaggccgccacgcgtggcgatggcttgagtggcgaaaatgtcacgcaaaatgtc
aaaaccatccgcagcattcctttaaaactcacgacggatacgccgcctagattgttggaa
gtgcgtggcgaagtattgatgttcaaagccgatttcgatgctttgaatgagcgtcaagcg
gctgaaggtggcaaattgtttgccaatccacgcaatgcggctgcaggcagtttgcggcaa
ttggatgcgaaaattgccgcacaacgaccgttggatttttttgcttacagcattgctcag
ttagacgaggcaatacagcctttaggtcaccagcaagaattgatgtttttagagcgtttg
ggtattccgacgccaccatcagattgctgtttgctcagcgataatatggctgatatcaat
gcattttatgcacaaatggcactcaagcgtcctgaattgccttttgatattgatggcatg
gtgattaaagtcaatagtttggctttgcagcagcgtttgggctttgtgtcgcgtgcgcca
cgttttgccattgctcacaaatttcccgcagaagaagcgccgactttggtggaagccatt
gatgtgcaaattggtcgtaccggcgctgtgacgcctgtggcacgtttggtgcctgtgcgt
gtcggtggtgtgacggtgaccaatgcgaccttgcacaatgaaggtgaagcgcaacgcaaa
gacgtgcgtgtgggcgatacagtgatggtgcgtcgtgcgggtgatgtgattcctgaagtg
gtgcgagtggtgtttgaaaagcgtccaatgcaagatgcgcctagtcaaacagatttgttt
gctaccgaatctttgccacaatcgccacgttaccaattacccacggtttgtcctgtgtgt
ggcagcgacattgtcaaagaaggcgatgaggccgtagcacgttgtacaggtgggatgttg
tgccaagcgcaacgtgcgcaagcgttgattcattttgcatcacgcaccgcgatggacatt
gaaggtctgggctcgcgtcaaattgagcaattggtggaattggatttggtgcatgaattt
gccgatttgtaccgtttggacattcccactttacagcgcttaaaacaaatcgatgatgaa
gctgaaaacaataagcgtgaaacgccgattaaatgggcacagaatattttgctaggttta
gaagccagtcgacaacctttattgtcacgtttgatttttgcgctaggcatacgccatgta
ggtgaacgaacggccaagacattagcgcaatatttcggtcagttggcattgatacgttct
atgcctgcgcctttattggcatgtttgcctgatattggggaagtggttgccaagagcatt
gcgcaatactttgctaatgctaaaaatcagcaacagatagatgatttgttaaatgtcggt
gtgttgccacaagaaaatgcgccgcatgtgcaattgttgcaagtattgagcatgtcagaa
tggttgatgcatttgcctgatttgcgcatgagtgccaaaaaagtggcgcaattattgtca
gaagcggcgacatttcatgctttgcgtgagcaagaggtcagtgatgtagcatggctgaca
tggcgctctaaagcggaaaatctacaacttctacaagacattgaaaacgcattacaagct
tgtcaggtgcaaacagagacattgttacaggatgcttctacggatatggcggcgcaggct
gttaatgaagcggtagcgggcaagacttttgtattgacaggtactttgcagcacaagcgt
gacgaagtacaagcgtggttagaggctgcgggtgcgaaagtcagtggcagtgtgtctaag
aaaaccgattttgttgtggcgggcgaagctgctggcagtaaactggataaggcaaacgcg
ctgggcgtggccgttttaaatgaacaacaattgttaattttattaggtaaaagtgatgag
aaaaattaa
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