Varunaivibrio sulfuroxidans: P3M64_13480
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Entry
P3M64_13480 CDS
T08892
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
vsu
Varunaivibrio sulfuroxidans
Pathway
vsu03030
DNA replication
vsu03410
Base excision repair
vsu03420
Nucleotide excision repair
vsu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vsu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
P3M64_13480 (ligA)
03410 Base excision repair
P3M64_13480 (ligA)
03420 Nucleotide excision repair
P3M64_13480 (ligA)
03430 Mismatch repair
P3M64_13480 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vsu03032
]
P3M64_13480 (ligA)
03400 DNA repair and recombination proteins [BR:
vsu03400
]
P3M64_13480 (ligA)
Enzymes [BR:
vsu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
P3M64_13480 (ligA)
DNA replication proteins [BR:
vsu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
P3M64_13480 (ligA)
DNA repair and recombination proteins [BR:
vsu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
P3M64_13480 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
P3M64_13480 (ligA)
MMR (mismatch excision repair)
DNA ligase
P3M64_13480 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
P3M64_13480 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
WES32235
LinkDB
All DBs
Position
2886027..2888111
Genome browser
AA seq
694 aa
AA seq
DB search
MTELDAIVELKALADEIAAHDAAYYQNDAPTVSDADYDALRRRNSAIEARFPRQVRDDSP
SKRVGAAPQSGFAKVKHTKAMLSLGNVFDEDELVEFVTGVRRFLKELRDDDKLSLEMVSE
AKIDGLSISLRYEKGRFVQGLTRGDGISGEDVSANLLSLKDIPKRIAVKSDAPLPEVLEV
RGEVYMAKDDFTRLNAEQVAAGVKPFANPRNAAAGSLRQKDPAVTARRPLHFFAYASGEI
SGGIAQIAATHWEFLARLEDWGFSVNPLARLCVNVSDMLASYRDVAARRALLPYDIDGMV
YKVNRFDWQERLGFVSRAPRWAVAHKFPAEQAQTVLRAISIQVGRTGVLTPVAELTPVTV
GGVVVSRATLHNEDEIARKDVRIGDTVIVQRAGDVIPQVVAVVGERRPADSIPFVFPELC
PRCGSHAVREPGEVARRCTGGLVCPAQAVERLRHFVSRGAFDIEGLGEKHVRDFLDAGII
KTPADIFRLPDRVEHLRGREGWAEKSIDNLISAIGRRKTISLARFIYALGIPQVGQATAR
LLAKQYISLERWRAAMDAAHNRESEAYGELIGIDGIGGRVADDILSFMDEAHNRDVLDDL
TDLLDRVEPFVAADHGASPIGGKTVVFTGTLEKMTRGEAKARAESLGAKVAGSVSKKTDY
LIAGPGAGSKAKKAQDLGVVVLNEDQWMAMLGEA
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
ttgacggaactggacgcgattgtcgaactgaaggccctggccgatgaaatcgccgcccat
gacgcggcgtattatcagaacgacgccccgactgtttccgatgccgactacgatgccctg
cgccggcgcaactcggcgatcgaggcgcggtttccccgtcaggttcgcgacgatagcccc
tcgaagcgagtcggggcggcgccgcaatcgggcttcgccaaggttaagcacaccaaggcg
atgctgtccttggggaatgttttcgatgaggacgaactggtcgaattcgtcacgggggtg
cgtcgcttcctgaaagaattgcgcgacgacgacaagctttccctggagatggtcagcgag
gccaagatcgatggtttgtccatttcgctacgctatgaaaaagggcgcttcgttcaaggc
ctcacgcggggcgatgggatcagcggcgaggacgtcagcgccaatcttctgtctttgaaa
gatattcccaaacggatcgcggtcaaatcggatgcgccgcttccagaggtgctggaagtg
cgcggtgaagtctatatggcgaaggacgattttacgcgccttaacgcggaacaggtcgcc
gccggcgtgaaaccgttcgccaatccgcgcaacgctgcggcgggcagcctgcgccagaag
gatcccgccgtcaccgcccgccgtccgctacattttttcgcctatgccagtggcgaaatc
agcggggggatcgcgcagatcgccgccacccattgggaatttttagcgcgccttgaggat
tgggggttttcggtcaatccgttggcccggttgtgcgtgaatgtgtccgatatgctcgcc
agctatcgcgatgtcgccgcgcggcgggcgttgttgccctacgatatcgacggcatggtc
tacaaggtcaaccgtttcgattggcaggaacggttgggcttcgtctcgcgtgcgccgcgt
tgggcggtcgcccataagtttcccgccgaacaggcgcagacggtgctgagggcgatctcc
atccaggtcgggcgcaccggggtgctgacaccggtcgccgaattgacgccggtaacggtg
gggggggtcgtggtgtcgcgagccaccttgcataacgaggatgagatagcacgcaaggac
gtccgcattggcgatacggtaatcgtgcagcgcgccggcgatgtgatccctcaggtggtc
gccgtggtcggcgaaaggcggcccgcagacagtatcccctttgtctttcccgagctttgc
ccgcgctgtggaagccacgccgtgcgcgagccgggagaggtcgcccggcgctgtaccggg
ggactggtttgtccggcgcaggcggtcgaacgcttgcggcatttcgtgtcgcgcggcgcc
ttcgatatcgagggtcttggggaaaaacacgtgcgcgatttcctagacgctgggatcatc
aagacccccgccgatatttttcgccttcccgatcgggtcgaacatcttcgtgggcgggaa
ggctgggcggaaaaatcgatcgataacctgatttccgcgatcggtcggcgcaagacgatc
tccttggcgcgcttcatttacgctctgggcattccccaggtcggccaggcgaccgcgcgg
ttgttggcgaaacaatacatcagtctggaacgttggcgcgccgccatggacgcggcgcac
aatcgcgaaagcgaggcttacggcgaattgattggcatcgacggcattggggggcgtgtc
gccgacgatattttgtcttttatggacgaagcgcacaatcgcgacgtcctcgatgacctg
acggacttgctcgatcgggtcgagccgttcgtcgccgccgatcatggcgcatcgccgatt
ggcggtaaaaccgtcgtttttaccggaactttagaaaaaatgacccgtggagaagccaag
gcccgggccgaatcgttaggggcgaaagtggcggggtcggtatcgaaaaaaacggattac
ctgatcgccgggccgggcgcgggatcgaaggcgaaaaaggcgcaagatctcggtgttgtc
gttctcaacgaagaccaatggatggcgatgttgggagaagcctga
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