Vagococcus teuberi: BHY08_04695
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Entry
BHY08_04695 CDS
T04578
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
vte
Vagococcus teuberi
Pathway
vte03030
DNA replication
vte03410
Base excision repair
vte03420
Nucleotide excision repair
vte03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vte00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BHY08_04695 (ligA)
03410 Base excision repair
BHY08_04695 (ligA)
03420 Nucleotide excision repair
BHY08_04695 (ligA)
03430 Mismatch repair
BHY08_04695 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vte03032
]
BHY08_04695 (ligA)
03400 DNA repair and recombination proteins [BR:
vte03400
]
BHY08_04695 (ligA)
Enzymes [BR:
vte01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BHY08_04695 (ligA)
DNA replication proteins [BR:
vte03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BHY08_04695 (ligA)
DNA repair and recombination proteins [BR:
vte03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BHY08_04695 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BHY08_04695 (ligA)
MMR (mismatch excision repair)
DNA ligase
BHY08_04695 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BHY08_04695 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
BRCT_2
HTH_45
HHH
Motif
Other DBs
NCBI-ProteinID:
APB31188
UniProt:
A0A1J0A5H3
LinkDB
All DBs
Position
977452..979473
Genome browser
AA seq
673 aa
AA seq
DB search
MGIDEATKRVGELRHTLNEWARAYYVKDAPLVSDHEYDKLYKELVSLEEQFPELVTSDSI
TQRVGGKLLDGFQKVEHTTPMMSLSNAFNEKDLRDFDKRVRKGTSKPISYMVELKIDGLA
INLTYDNGQFVQGATRGDGVVGEDITQNLRTVHSIPLSLQTPVTLDVRGECFMPKESFVR
LNEERDKNGESVFANPRNAAAGSLRQLDSSVTAKRQLSTFLYTIANPEELGLTTQTDALD
YLDSLGFKTNHQRELCATIDDVWQYIVQFSDKRHTLDYEIDGIVIKVNDFDAQNELGYTV
KAPKWAIAYKFPAEEVQTVLRDIEWTVGRTGVVTPTAVMDPVQLAGTTVSRASLHNCDLI
AEKDIRLLDTVVIHKAGDIIPEVTQVVLDKRPEDSQPYEFPTHCPACDAELERIESEVAL
RCLNPACPAQIKEGLNHFVSRNAMNIDGLGPRVLEQMYEKELIKQAADLYYLTQEQLLTL
DKIKEKSANNILEAIANSKGNSLERLLFGLGIQHVGSKAAKIISSEFGTIDKIIEANKEE
IFAIDTIGPVMADSITKYFSIPETLEQIDKLKQAGVNMTYLGVTKEDITSIESPFKDKTI
VLTGSLTQFKRAEAKQKIESLGGKVTGSVSKKTDIVVAGEEAGSKLTKAQELGIDVWSEQ
QMVDAINASHKTE
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
ttgggtattgatgaagcaacaaaacgtgtgggcgagttacgtcacacgttaaatgaatgg
gcacgcgcttattatgtgaaagatgcgccactcgttagtgaccatgaatatgataagtta
tacaaagaattagtgagtttagaagaacagtttccagaacttgtaacaagtgattctatc
acacaacgagtgggcggaaaattactagacgggtttcaaaaagtcgagcacacgacacca
atgatgagtttaagtaatgcctttaacgagaaagacttacgtgattttgataaacgcgtg
agaaaaggcacgagcaaacccattagttacatggtagaattgaagattgacggcctggcg
attaatttgacttatgataatggacaatttgttcaaggtgcaactcgtggagatggtgtt
gtaggggaggatattacgcaaaatttgcgtaccgttcactctattccactatcactacaa
acacctgtgacacttgacgttcgtggtgagtgctttatgccaaaagagtcgttcgttaga
ctaaacgaggaacgtgacaaaaacggcgaaagtgtgttcgcgaacccccgtaatgcagca
gcagggagtttacgtcaacttgattcatctgtgacagccaaacgtcagttaagtacgttt
ttatatacgattgctaatcctgaagaattagggttaacaacccaaacagacgcattagat
tatttagatagtttaggatttaaaaccaatcatcaacgtgaactttgtgccacaattgat
gacgtgtggcaatacattgtccaatttagcgataaacgtcacacgcttgattatgaaatt
gatggtatcgtgattaaagtcaatgattttgatgcacaaaatgaattaggttatacggta
aaagcacctaagtgggcgattgcgtataagtttccggctgaagaagttcaaacagtctta
cgagacatcgagtggacagttggacgaacgggcgttgtaacgccaactgcggtgatggat
ccggtgcaactagctggaacaaccgtctcacgagctagcttacataattgtgatttgatt
gctgaaaaagacattcgattattggatacagttgtgattcacaaagctggagatataatt
cctgaggtcactcaagttgtgttggataagcgacctgaagacagtcagccgtacgagttt
ccaacacattgcccagcatgtgatgctgagttggaacgcattgagtcagaagttgcttta
agatgtttaaatccagcttgtccagctcaaattaaagaaggattgaatcacttcgtgtcg
cgaaatgcgatgaatattgatggtttaggtcctcgtgtgttagagcaaatgtatgaaaaa
gaattgataaaacaagccgctgatttatactatctaacacaagagcaattattaacgctt
gataaaatcaaagaaaaatcagcgaataatattttagaagccattgcaaatagcaaaggc
aattcattagagcgattgttgtttggtttaggaattcaacatgttggatcaaaagctgct
aaaattatttcaagtgaatttggtacgattgataaaattatcgaagcaaataaagaagag
atttttgcgattgacacgattggaccagtgatggctgatagtattaccaaatatttctcg
attccagaaacattggaacaaattgacaaactaaaacaagctggggtgaatatgacgtat
cttggtgtgacaaaagaagacatcacatcaatcgagtccccatttaaagataaaacgatt
gtcttaaccggaagtttgacacaatttaaacgagctgaggccaaacaaaagattgagtcg
ttaggtggaaaagtgacgggtagtgtgtcgaaaaaaacggatattgttgttgctggagag
gaagctggtagcaagttaaccaaagcacaagaattaggaattgacgtttggagtgaacaa
caaatggttgatgccataaacgcgtcacataaaacagagtaa
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