KEGG   Vibrio tarriae: CEQ48_14045
Entry
CEQ48_14045       CDS       T08683                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
vti  Vibrio tarriae
Pathway
vti03030  DNA replication
vti03410  Base excision repair
vti03420  Nucleotide excision repair
vti03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:vti00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CEQ48_14045
   03410 Base excision repair
    CEQ48_14045
   03420 Nucleotide excision repair
    CEQ48_14045
   03430 Mismatch repair
    CEQ48_14045
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:vti03032]
    CEQ48_14045
   03400 DNA repair and recombination proteins [BR:vti03400]
    CEQ48_14045
Enzymes [BR:vti01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     CEQ48_14045
DNA replication proteins [BR:vti03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     CEQ48_14045
DNA repair and recombination proteins [BR:vti03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     CEQ48_14045
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     CEQ48_14045
   MMR (mismatch excision repair)
    DNA ligase
     CEQ48_14045
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      CEQ48_14045
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT DNA_ligase_ZBD Nlig-Ia PTCB-BRCT HHH DZR_2
Other DBs
NCBI-ProteinID: ASK55847
UniProt: A0AAU8WHT3
LinkDB
Position
1:complement(1828564..1830573)
AA seq 669 aa
MSDVAQRLTELRKTLHEHGVRYYVEDAPTIPDAEYDRLMRELLELEAAHPELMSSDSPSL
RVGGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIPAVQHSAFCCEPKLDGLA
VSLLYENGVLTRAATRGDGTTGENITENVRTIKSIPLRLQGADFPTRLEVRGEIFMPKAG
FEALNARALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEGGELAPSHY
QRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQSLAYEIDGVVIKVDDIQLQERL
GFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHN
ADEIERLGVMVGDTVVIRRAGDVIPQIVSVVLDRRPENAKSIVFPTRCPVCQSDVERVEG
EAVARCSGGLICQAQRKEALKHFVSRKAMDVEGLGDKVIEQLVDREMVSTPADLFRLRAG
ELTILERMGPKSAQNVIDALNKAKQTTLPKFLYALGIREVGEATALNLAQHFLSLEAIQQ
ASLEQFIEVPDVGVVVASHLQAFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAGK
IVVLTGSFTQLSRNDAKAALQALGAKVTGSVSKNTDMVFAGEAAGSKLAKATELGIQVFD
EQALIEFLK
NT seq 2010 nt   +upstreamnt  +downstreamnt
atgtcagatgtcgcgcaacgattaacagagttaagaaaaaccttgcatgagcatggtgtc
cgctactacgtagaagatgcccctaccattccggatgcagaatacgatcgcttaatgcgc
gagctgctggaattggaagcggctcacccagaattgatgagctcggactcgcccagttta
cgagtcggaggacgtccgctggatgcttttgaatctgtcgtgcatgaaattccgatgtta
tcgctcgataacgcctttgatgatggtgaattagaaagcttttatcgccgtatgacggat
cggatcccggcggtacagcatagtgccttttgttgtgagccgaaactggatggcttggcg
gtcagtttactatacgaaaatggtgttctgacccgcgcggcgactcgtggtgatggtacg
accggcgaaaatatcacagaaaatgtacgtaccattaaatcaatccctttacgcctgcaa
ggcgcagattttccaactcgccttgaagtgcgcggtgaaatatttatgcctaaagcgggg
tttgaagcacttaacgcacgagcgcttaaaaaaggtgaaaagcagtttgtgaaccctcgt
aatgcagcggcggggagcctacgtcaactcgactccaaaattaccgcccaacgtccactt
gctttttacgcttacagtgttggtgttattgaaggtggagagttagcgcccagccactat
caacgatttttacaactaaagggctgggggctgccgatttgtccagaaaccaaactggta
acttctctcgccgaagtcaaagctttttatcaagacattttgcaacgtcgccagtctttg
gcttatgagattgatggcgtcgtcattaaagttgacgatatccagttgcaagagcgattg
gggttcgttgctagagcgccgcgctgggcgattgcctataaatttcctgcacaggaagag
ctcaccttgctcaatgatgttgaatttcaggtaggtcgtactggtgcgattaccccggtt
gctaagttggaacctgtgtttgtcggtggtgttacggtaagtaatgccacattacataat
gccgatgagattgagcgtttgggagtgatggtcggagatacggtggtgatccgccgtgct
ggggatgtcatcccacaaatcgtctctgtggtgttagaccgacgccctgagaatgcaaag
tccattgtatttcctactcgctgcccagtttgtcaatcggatgttgaacgggttgaagga
gaagcggttgctcgatgttccggcggactgatttgccaagctcagcgcaaagaggcattg
aagcattttgtttctcgcaaggccatggatgtagaaggcttgggcgataaagtgattgag
caactggttgaccgagaaatggtgagtacacctgcggatttattccgattaagagcggga
gagctcacaattttagagcgaatgggtcccaaatcggcgcagaatgtgattgatgctctc
aataaagcgaagcaaaccacattacctaagtttttatatgcactgggtattcgtgaagtc
ggcgaggctaccgcactcaatttggctcagcactttttaagtttggaagcgattcaacaa
gcgagtttagaacaatttatcgaagttcctgatgtcggagtggttgtcgcaagccattta
caggccttctttgcgcaagaccgtaaccaacaagtgatcaatgaattgctagaacaaggc
atcacatggccggcgctaacggctgcgcccgtggcggtagactctgctctagcgggcaaa
attgttgtgttaaccggcagttttactcaattgtctcgtaatgatgcgaaagccgcacta
caagctttaggtgctaaggtgacggggagcgtatcaaaaaatactgatatggtttttgca
ggagaagcagcgggctctaagctagccaaagcgaccgagttaggtatccaagtcttcgat
gagcaagcattaatcgaatttttgaaataa

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