Vibrio tubiashii: IX91_11535
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Entry
IX91_11535 CDS
T03445
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
vtu
Vibrio tubiashii
Pathway
vtu03030
DNA replication
vtu03410
Base excision repair
vtu03420
Nucleotide excision repair
vtu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vtu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IX91_11535 (ligA)
03410 Base excision repair
IX91_11535 (ligA)
03420 Nucleotide excision repair
IX91_11535 (ligA)
03430 Mismatch repair
IX91_11535 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vtu03032
]
IX91_11535 (ligA)
03400 DNA repair and recombination proteins [BR:
vtu03400
]
IX91_11535 (ligA)
Enzymes [BR:
vtu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
IX91_11535 (ligA)
DNA replication proteins [BR:
vtu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
IX91_11535 (ligA)
DNA repair and recombination proteins [BR:
vtu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
IX91_11535 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
IX91_11535 (ligA)
MMR (mismatch excision repair)
DNA ligase
IX91_11535 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
IX91_11535 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
DNA_pol_lambd_f
DUF4874
DZR_2
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
AIW14807
UniProt:
F9T8Y2
LinkDB
All DBs
Position
1:complement(2479679..2481688)
Genome browser
AA seq
669 aa
AA seq
DB search
MSTEIQEKLNQLRKTLHYHGVKYYVEDNPEIPDAEYDRLMRELMELESQNPKLITIDSPS
QRVGGAPLDGFDSVTHEIPMLSLDNAFDDGELESFHKRMGDRIPSAKFDVFCCEPKLDGL
AVSLLYENGVLVQAATRGDGATGENITENVRTIKAIPLKLQGEGWPARIEVRGEVFMPKA
GFDKLNEQALKKGEKVFVNPRNAAAGSLRQLDSRITATRPLSFYAYSVGVVEGVELSSSH
YQRFIQLKGWGLPMCPETKRVNNLDEVKAYYQDILERRESLAYEIDGVVIKVDQITLQEQ
LGFVARAPRWAIAYKFPAQEEITTLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLH
NADEIERLGVMVGDTVVIRRAGDVIPQIVSVVTDRRPESAREIVFPENCPVCKSQVERVE
GEAVARCSGGLVCQAQRKEALKHFVSRKALDVDGLGEKVIEQLVDREMVETPADLFKLSA
GVITVLDRMGPKSAQNVVDALNKAKQTTLARFLYSLGIREVGEATAANLAQHFKTLDLVK
AANHEKLVEVQDIGDIVASHITAFFTQDKNQSVIDELIEQGVSWPDIEEKDEDAPQPLEG
KTVVLTGSLSQLTRSDAKAALQALGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIR
TEEDLISLM
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgtccacagagattcaagagaagcttaatcaattgcgtaaaacgcttcactaccatgga
gtgaagtactacgtcgaggataatccagaaataccggatgctgaatatgacaggctcatg
cgtgagcttatggagcttgagtctcaaaatccaaaacttatcaccatagactcaccaagc
caacgagtcggcggagcgccattagacggttttgactcggtcacgcacgagattccaatg
ctttcattagataatgcttttgatgatggtgagctagaaagcttccataagcgtatgggc
gatcgtattccaagcgcgaagtttgatgttttctgctgtgaaccaaagctagatggcctt
gcggttagcctgctgtatgaaaacggggtactggtccaagctgccactcgtggcgatggt
gcaacaggtgaaaatatcaccgagaacgttcgtactatcaaagccattccattgaagctt
caaggtgaaggttggccagcgcgcattgaagtgcgtggtgaagtatttatgcctaaagcg
ggttttgacaaacttaacgagcaagcactaaagaaaggcgaaaaagttttcgttaacccg
cgtaacgcagcggcaggtagtttgcgtcaattggattcacgtataacagcaactcgccca
ttgagcttctatgcctacagtgtcggtgtggttgaaggtgttgagctctcttcgagtcac
tatcaacgattcatccagctgaaaggctggggattgccaatgtgtccagagacgaagcgc
gtaaacaatctcgatgaagtgaaagcttattatcaagatatcctcgaacgccgtgagtca
ttagcgtacgaaatcgatggggtggtgattaaagttgatcagatcactcttcaagaacaa
ctaggctttgtcgctagagcgccacgttgggcgattgcatacaagttccctgctcaagaa
gaaatcaccacgctaaatgatgtcgagttccaagttggacgtacaggcgctatcacgcct
gttgctaagctagagcctgtctttgtgggtggcgtcaccgtcagtaatgcaacccttcac
aatgccgatgaaattgagcgtttgggcgtcatggttggcgatacggttgtgatacgaaga
gcgggtgacgtgatccctcaaattgtttctgtggtgactgatcgtcgtccagagagcgct
cgtgagattgttttcccggaaaactgccctgtgtgtaaatcacaagtggaacgagtagaa
ggtgaagcggttgctcgttgtagtggtggtctcgtttgtcaggcgcaacgtaaagaagcg
ttgaagcactttgtatcgcgtaaggcgctagatgttgatgggctaggtgagaaagtgatt
gagcagcttgttgatcgcgaaatggtagaaacacctgccgacctgtttaaactatctgct
ggtgtgattactgtacttgaccgaatgggaccaaaatctgcgcaaaatgtggttgatgct
ttgaacaaagctaagcaaacaaccttagctcggttcttatattcgttaggtattcgtgaa
gtaggtgaagcaacggcggcaaatcttgcgcaacattttaaaactttggacttagttaaa
gctgcaaaccatgaaaagctggtcgaagttcaagatattggcgatatagttgcgagccat
atcacggcattttttactcaagacaaaaaccaaagcgtgattgatgaactgatcgagcaa
ggggtgagttggcctgatatcgaagagaaagatgaagatgctcctcagccgctagaaggt
aaaactgtggtcttaactggctcactatctcagcttactcgttcagatgcaaaagctgct
ctgcaagcactaggtgcaaaagtaaccggtagtgtttctaagaaaacagacattcttttt
gctggtgaaaatgcgggctctaagcttgctaaagcgcaagagttgggcattgaaattcgt
accgaagaagaccttatttcgttaatgtaa
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integrated database retrieval system
