Vigna umbellata (ricebean): 124821517
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Entry
124821517 CDS
T09662
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
vum
Vigna umbellata (ricebean)
Pathway
vum03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
vum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
124821517
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vum03400
]
124821517
Enzymes [BR:
vum01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
124821517
DNA repair and recombination proteins [BR:
vum03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
124821517
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
DNA_ligase_A_C
BRCT
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
AEP-like
Motif
Other DBs
NCBI-GeneID:
124821517
NCBI-ProteinID:
XP_047149361
LinkDB
All DBs
Position
Unknown
AA seq
1168 aa
AA seq
DB search
MATEQTKFSVLCSLFTWTQRSKSAAKKRSKFRKFLDAFCIDRNFFPAIRLILPNLDRERG
SYGLKESVLATSLIDALGISRDSPDALRLINWRKGGAATGATAGNFALVATEVLHRRQGT
ASGGLTIRELNELLDRLASGENRAEKILVLSTLIQKTNAQEMKWIIMIILKDLKLGISEK
SIFHEFHPDAEDLFNVTCDLKLVCEKLRDRNQRHKRQDIEVGKAVRPQLAKRVANATEAW
KKLHGKEVVVECKFDGDRIQIHKNGTEIHFFSRNFIDHSEYAHAMSDIIIQNILVDRCIL
DGEMLVWDTSSKRFAEFGSNQEIAKAARDGLDSDRQLCYVAFDILYFGDTSVIHQSLKER
HEILCKVVRPMKGRLEVLVPNAGINSHLTSGEPCWSFIAHKVDEVERFFKETIENRDEGI
VLKDHSSKWEPSDRSGKWLKLKPEYIQAGSDLDVLIIGGYYGSGRRGGQVAQFLVGLAER
QSPNAQPMRFISFCRVGTGLSDEELDVVITKLKPYFRKYEYPKKRPPSFYQVTNHSKERP
DVWVDSPEKSIILSITSDIRTIESEVFAAPYSLRFPRIDRVRYDKAWNECLDVQSFIELV
HSSNGTTQRDTEYGSKQDSKPKRMKSSTRGEKKNMSIVPSHLIQTDISSIKGGSLIFSNM
MFYFANVPSSHSLESLHKIVAENGGTFSMNLNNSVTHCVAADSKGFKFEAAKRHGDIIHY
SWVLDCYEQKKLVCLQPKYFLFLSELTKKKFREEIDEFSDSFYMDLDLGDIKQLLSNISK
SEDVSTVDHYRKKYCPKDKWSFFCGCSIYFHTATPSSNGDWHYILQLALRRFKLEVLMGG
GKVTSNLTSATHLVAFLVPGCLTDFEQILSSFTSVERKILRSKRLYIVNSQWLEDCSDSS
QRLPEDSYSLKPWGIEETTAEDCGQDLALEAHQCGDNTQHQNTSFSDKGNRKRSEQVACE
DSMAFLSREKGVKRKRGRPVGSGIKNVKPTGKQTRRARPQNVKKPTKIWEYESSDESDSR
DKQEIDTRAGSLNFYKKHSEPQENEERENVQVSRTVESSEQNKVDNKLEDLKDNDHERML
IPEIEMTDRYNDQKNEVVEKLDFSADPLQAMLFDMIPTLGTQKVEQPMNLSVREEKLAET
SNAETEPITTKKNKVSFMDAANELLKDW
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggagcaaaccaaattcagcgtgttgtgcagcctctttacgtggacgcagcgg
agcaagtcggcggcgaagaagcgctccaagttccgcaagttcctcgacgccttctgcatt
gaccgcaacttcttccccgctattcgcctcattctccccaacctcgatcgcgagcgcggc
tcctatggcctcaaggagtccgttctcgccacctccctcatcgacgccctcggcatctcc
cgtgactcccccgatgccctccgactcatcaattggcgtaagggaggcgccgccaccggc
gctacagcaggaaatttcgccctcgtcgccaccgaggtgctgcaccgcaggcaagggacc
gcttcgggagggttgacgataagggagttgaatgagttgcttgaccggttggcttccggt
gaaaacagggctgagaaaattttggttctttctacccttatccaaaagacaaatgcacag
gaaatgaagtggattatcatgataatcctgaaagatctaaagctgggaattagtgaaaaa
agcatttttcatgagttccatcctgatgcagaagacttgtttaatgttacctgtgactta
aaactagtatgtgaaaagctaagggatcggaatcagcggcataaacggcaggatattgaa
gttgggaaagctgtccgcccccaattagctaagagagttgctaatgcaactgaagcatgg
aagaagcttcatgggaaggaagtggttgttgagtgcaaatttgatggcgaccgaattcaa
attcataaaaacggaactgagatacattttttctcaaggaactttatagatcattctgaa
tatgcacatgcaatgtcagatatcataatacaaaatattcttgtagataggtgtatcctt
gatggtgaaatgttggtgtgggacacatcctcaaaacgctttgctgagtttggctcaaat
caggaaatagccaaggcagcaagagatggacttgatagtgacagacagttatgctatgtt
gcgtttgatatcctttattttggagatactagtgtgattcaccaatctttgaaggaaaga
catgagattttatgtaaagttgttaggccaatgaagggacggttggaagttttggtacct
aatgctggtatcaacagtcatcttacttcaggtgaaccttgttggtcatttattgctcat
aaagttgatgaagttgagaggtttttcaaggaaaccattgaaaatagagatgagggaatt
gttttaaaagaccacagctctaaatgggaacctagtgatcgtagtggaaagtggctaaaa
ttgaagcctgaatacattcaagctggctctgatttggatgtacttatcataggtggctac
tatggttctggacgacgcggaggacaggttgctcaattcttggttggccttgcagaacgt
caatcaccaaatgcacaacctatgcggtttatatccttttgcagagttggcactggactc
tctgatgaggagcttgatgttgtaataaccaaattaaaaccatacttcagaaagtatgaa
tatccaaagaagaggccaccaagtttttatcaagtaactaatcattcaaaagaaagacct
gatgtgtgggttgatagccctgagaaatcaattattctgtctattaccagtgatatccga
actatagaatctgaggtatttgctgcaccttacagcctgagatttcctaggattgacagg
gtgagatatgacaaagcttggaacgaatgccttgatgttcaatcatttatagaactagtg
cattctagcaatggtaccacacagagggatacagaatatggcagcaaacaggacagtaaa
ccaaaaagaatgaaatcctccactaggggagaaaagaaaaacatgtccatcgttccttct
catttaattcaaactgatatttccagcattaaggggggctccttaatattttcaaatatg
atgttctactttgctaatgtgccttcatcgcattctcttgagtccttgcacaaaatagtt
gctgagaatgggggaactttttcaatgaatttgaacaactcagtcacacattgtgttgcc
gcagacagcaagggctttaaatttgaagcagcaaagcgtcatggtgatatcattcattat
tcttgggtactagactgttatgagcaaaaaaagcttgtctgcttacagcctaagtacttc
cttttcctatctgaactgacaaagaagaagttccgagaagaaattgatgagttctcagac
tctttctacatggacctagatcttggagacatcaagcagctcttaagcaatattagtaag
tctgaagatgtcagcactgtcgatcattacaggaaaaaatactgcccaaaggataagtgg
tctttcttttgtggatgttcaatttatttccacactgcaacaccttcatcgaacggagat
tggcattatatattacaacttgctttgaggagattcaagcttgaggttctcatgggtggt
ggaaaagttacctctaatcttacttctgcaacccatttagtggcctttcttgtgccggga
tgtctgactgactttgaacaaatactgagtagtttcacttcagtagaaaggaaaattctc
cgaagcaagaggttgtatatagttaattcccagtggttggaagattgttcagacagtagc
caaagattaccagaagactcttacagtttgaagccctggggaatagaagagacaactgct
gaagattgtggacaggacttggcgttagaggctcatcagtgtggagataacacacaacac
caaaatacatctttctctgacaagggaaatcggaaaagaagtgaacaagttgcatgcgaa
gacagtatggccttcttatcccgagagaagggtgtcaaaaggaaaagaggaagacctgtg
ggcagtggcataaaaaatgtaaaaccaactggcaaacaaactcgaagagcacgaccacaa
aatgtgaaaaagcctactaaaatatgggaatacgaatcatcggatgaaagtgattctcgt
gacaagcaggagattgacactagagcaggaagtcttaacttttataagaaacattcagaa
ccccaggagaatgaggaacgggaaaatgtccaagtttctaggacagtggaaagttctgaa
caaaataaggtagacaacaagctggaggacttgaaggacaatgatcatgaaagaatgttg
attcctgaaatagaaatgactgataggtacaatgaccaaaagaatgaggtggtagagaaa
ttagacttttctgctgacccccttcaggcgatgttatttgacatgattcctactcttggc
acccaaaaagttgagcaacctatgaatcttagtgttagagaagagaaactagcagaaacc
tccaatgcagaaacagagcctataactacaaagaaaaacaaggttagcttcatggatgct
gccaatgagctgctgaaggactggtag
DBGET
integrated database retrieval system
