KEGG   Vigna umbellata (ricebean): 124821732
Entry
124821732         CDS       T09662                                 
Name
(RefSeq) small nuclear ribonucleoprotein-associated protein B-like
  KO
K11086  small nuclear ribonucleoprotein B and B'
Organism
vum  Vigna umbellata (ricebean)
Pathway
vum03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:vum00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    124821732
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vum03019]
    124821732
   03041 Spliceosome [BR:vum03041]
    124821732
   03032 DNA replication proteins [BR:vum03032]
    124821732
Messenger RNA biogenesis [BR:vum03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    U7-dependent histone pre-mRNA processing factors
     124821732
Spliceosome [BR:vum03041]
 Complex A
  U1 snRNP components
   Sm proteins
    124821732
  U2 snRNP components
    124821732
 Complex B
  U1 snRNP components
    124821732
  U4/U6.U5 tri-snRNP components
    124821732
 Complex C
  U2 snRNP components
    124821732
DNA replication proteins [BR:vum03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Telomerase complex (fungi)
    Sm core complex
     124821732
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 124821732
NCBI-ProteinID: XP_047149622
LinkDB
Position
Unknown
AA seq 225 aa
MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKPA
EGGDREDRRTLGLVLLRGEEVISMTVEGPPPPEESRSKAVGAAALAGPGIGRAAGRGIPP
APVVQAQPGLAGPVRGVGGPAPGMMQPQISRPPQLNAPPYPGGPPVMRPPGQMPGQFAPP
PMARGPPPPMPPGQFVPPRPGGGPPQFSVPPPQFGQRPMGPPSPG
NT seq 678 nt   +upstreamnt  +downstreamnt
atgtcgatgtctaagagttccaagatgctccagtacatcaactaccgaatgcgcgtcacc
attcaggacggacgccagctcgtcggaaaattcatggcattcgaccgccacatgaacctt
gttctcggcgactgcgaggagttccgaaagcttcctccggccaagggcaagaagcctgcc
gaaggcggcgaccgtgaggaccgccgcacgctcggtcttgtactcctccgcggcgaggag
gtcatctccatgaccgtcgagggaccacctccgccggaagagtcccgctcaaaggccgtc
ggtgccgccgcactcgccggccccggcatcggtcgtgccgccggaagaggcattcctccc
gctcccgttgtccaggcccagcctggtctcgccggcccagttcgcggcgttggcggccct
gccccgggcatgatgcagccgcagatctcgcgtccaccgcagctcaatgcgccgccgtat
cctggcggtccgccggttatgcgtccaccagggcagatgccagggcaattcgctcctccc
cccatggccaggggtccgcctcctccgatgccacccggacaatttgttcctccaagacct
ggtggcggtccacctcagttctccgttcctcccccgcagtttggacagcgccccatggga
cctccttctccgggatag

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