Vigna umbellata (ricebean): 124824771
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Entry
124824771 CDS
T09662
Name
(RefSeq) 5'-3' exoribonuclease 4 isoform X1
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
vum
Vigna umbellata (ricebean)
Pathway
vum04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
vum00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
124824771
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vum03019
]
124824771
Messenger RNA biogenesis [BR:
vum03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
124824771
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
124824771
NCBI-ProteinID:
XP_047153231
LinkDB
All DBs
Position
Unknown
AA seq
956 aa
AA seq
DB search
MGVPAFYRWLADRYPLSIVDVVEEDTAGGDGAVDVSKPNPNGMEFDNLYLDMNGIIHPCF
HPDGKPAPATYEDVFKIMFDYIDHLFSLVRPRKLLYLAIDGVAPRAKMNQQRSRRFRAAK
DAAEAEAEKERLREEFEGEMELLSSKDKPETYDSNVITPGTPFMAVLSVALQYYIQTRLN
YNPGWINTKVILSDSNVPGEGEHKIMEYIRSQRNLPGFNPNTRHCLYGLDADLIMLALAT
HEVHFSILREVITFPGQQDKCYQCGQIGHFAADCRGKPGEKPEDWNPVDDAPVHKKKYQF
LNIWVLREYLQYEMEIPNPPFEIDFERIVDDFVFLCFFVGNDFLPHMPTLEIREGAVNLL
MHIYRKEFTAMGGYLTEAGEVFLERVEHFIQSVAVHEDQIFQKRVRIQQATEINEELRAR
ARGEMPEEPRASLSDKVKLGEPGYKERYYAEKFGALNLEEIDKIKKDTVLKYVEGLCWVC
RYYYQGVCSWQWYYPYHYAPFASDLKDLADLEITFFLGEPFKPFDQLMGTLPASSSSALP
EKYRDLMTDPSSPILEFYPADFEIDMNGKKYAWQGVAKLPFIDEKKLLSATSKLEGTLTV
EEQLRNSKMLDLLYVNRAHNLAPYILSYYQYSCQFSLHDRPAVPIDPSASSHGMNGYLWL
YERNVLRTVVSSPIKGLQDIEYNQVLNITYLNPRKHKHIPRPPNGVQMPKKILKAIDIKP
FPVLWHEENSGRRHGRDRPQLHGAMAGPQLGEAAHRLVKNTLNIKPNNATYGFPEQLPGH
HAMNRVLRSPGPSGPGKYYAEDTSGYYGHHYNHQGMMPRPRYPVSSNGGHNDKQNFRIQD
RSQHHEQNYYNGRTGFHTFTVEEGPRPRPYAVPPPKTPVVMLSRPPNSGPTTNLQQQFVG
PPIPPPNWITRAPDTNGIYARHQEVAIGGAYDNKHMKKVYQVRSRQPQDMPEYGNQ
NT seq
2871 nt
NT seq
+upstream
nt +downstream
nt
atgggagtgccagcgttttaccggtggctcgcggatcggtacccgctctcgatcgtcgac
gttgtggaggaggacaccgccggcggcgacggcgctgttgatgtttctaaacctaatccc
aatggcatggagttcgacaacttgtacttggacatgaacggcatcattcacccctgtttt
catcctgacggcaagccggcacctgctacctatgaagatgtattcaaaataatgtttgac
tacattgaccatctattttcattggttcgcccaaggaagcttctttatctcgcaattgac
ggtgttgcaccaagagccaaaatgaatcagcaaagatcacggcgattccgagccgcaaaa
gatgcagctgaggctgaagctgaaaaggaaagactcagggaagaatttgagggtgagatg
gaactcttgtcttctaaagacaagcctgaaacctatgactcaaatgtcattacccctggc
actccatttatggcagtgttatcagtggctcttcagtattatatacagactagattaaat
tacaaccctggctggataaatacaaaggttatactttctgattcaaatgttcctggtgag
ggagaacataaaataatggaatacatacgatcacaacgtaaccttccaggatttaatcca
aatactcgtcactgtttgtatggattggatgctgatttgattatgttggccttagccaca
catgaggttcatttctccatattaagggaggtaattactttccctggacaacaggataag
tgttatcagtgtgggcaaattggccattttgcggctgattgtcgtggtaagccaggtgag
aaacctgaggactggaatccagttgatgatgccccagttcacaagaagaaatatcagttt
cttaacatctgggtgctgcgtgaatatctgcaatatgaaatggagatccccaaccctcct
tttgagattgactttgaacgcatagtggatgattttgtatttctatgcttctttgttggc
aatgactttcttcctcacatgccaacattagaaatacgtgagggagctgtcaacttattg
atgcatatttatagaaaggaattcactgccatgggtggttatcttactgaagcgggtgag
gttttcttagagagagtggagcattttattcagtctgttgctgttcatgaagatcaaata
tttcagaaacgagttcgcattcaacaggctacagaaattaatgaagagttgagagctagg
gcaagaggagaaatgcctgaagaaccacgagcatctctttcggacaaggttaagttagga
gagcctggatacaaggaaaggtattatgcagaaaaatttggtgcattgaatctggaggag
atcgacaaaatcaagaaagatacagtcttgaaatatgtagaaggcctttgttgggtttgt
cggtattactaccagggtgtctgctcatggcaatggtactacccataccattatgctcct
tttgcttctgatcttaaagatctagctgatctggagataactttttttttgggagaacca
tttaagccatttgatcaactaatggggaccctacctgcatcaagttcaagtgcactgcct
gaaaaatacagggatttgatgactgatccttcatcacctattcttgaattctaccctgct
gattttgagattgatatgaatggcaaaaaatatgcatggcagggcgttgccaagttgcca
ttcattgatgagaaaaaattgctctctgccacaagcaagcttgaaggaacattaacggtg
gaggaacagctccgaaatagtaagatgcttgatttgctttatgtcaacagagcgcataat
ttggctccatatatcttatcgtactaccaatattcttgtcaattctctctgcatgacaga
cctgctgtacctattgatccaagtgctagcagtcatggtatgaatggatacctctggttg
tatgaaagaaatgtgctcagaaccgttgtatcctctcccatcaagggattgcaagacatt
gagtacaatcaagttttaaatattacctatcttaatcctcgtaaacataaacatattcca
agacctccaaatggtgtacaaatgccaaaaaagatattaaaagccattgatattaaacct
tttcctgtgttatggcacgaagaaaatagtggtcggcgtcatggcagagacagaccacaa
ctacacggagcaatggctgggcctcaactgggagaagcagcacatcgtcttgtgaagaac
acccttaatattaaaccaaataacgcaacatacggattcccagagcagcttccaggccat
catgcaatgaacagggtgcttagatcaccaggaccctctggacctggtaaatattatgcc
gaggacacaagtggttattacggacatcattacaatcaccagggcatgatgcctagacct
agatatccagtctcatccaatggtggacataatgacaaacagaattttaggatacaggat
aggtcacagcatcatgaacagaattactacaacgggagaactgggttccatacttttaca
gtggaggaaggcccaagaccaaggccatatgcagtgcctccaccaaagacacctgtggtg
atgttatcaaggccacccaattcaggaccaacaactaatctgcaacagcaatttgtgggt
cctcctataccacctccaaactggattactagagcacctgatacgaacggaatatatgct
aggcatcaagaagttgcaattgggggagcttacgataataagcacatgaagaaggtgtac
caagttagaagtcggcaaccccaagatatgccagagtacgggaatcaatag
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