Vigna unguiculata (cowpea): 114163900
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Entry
114163900 CDS
T06017
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
vun
Vigna unguiculata (cowpea)
Pathway
vun03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
vun00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
114163900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vun03400
]
114163900
Enzymes [BR:
vun01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
114163900
DNA repair and recombination proteins [BR:
vun03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
114163900
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
DNA_ligase_A_C
BRCT
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
AEP-like
Motif
Other DBs
NCBI-GeneID:
114163900
NCBI-ProteinID:
XP_027904081
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All DBs
Position
9:2481731..2495989
Genome browser
AA seq
1157 aa
AA seq
DB search
MATEQTKFSVLCSLFTWTQRSKSAAKKRSKFRKFLDVFCIDRNFFPAIRLILPNLDRERG
SYGLKESVLATSLIDALGISRDSPDALRLINWRKGGAATGATAGNFALVAAEVLHSRQGT
ASGGLTIKELNELLDRLASGENRAEKILVLSTLIQKTNAQEMKWIIMIILKDLKLGISEK
SIFHEFHPDAEDLFNVTCDLKLVCEKLRDRNQRHKRQDIEVGKAVRPQLAKRVANATEAW
KKLHGKEVVVECKFDGDRIQIHKNGTEIHFFSRNFIDHSEYAHAMSEIIMQNILVDRCIL
DGEMLVWDTSLKRFAEFGSNQEIAKAARDGLDSDRQLCYVAFDILYFGDTSVIHQSLKER
HEILCKVVRPMKGRLEILVPNAGINSHLTSGEPCWSFIAHNVDEVERFFKETIENRDEGI
VLKDRSSKWEPSDRSGKWLKLKPEYIQAGSDLDVLIIGGYYGSGRRGGQVAQFLVGLAER
PSPNAQPKRFISFCRVGTGLSDEELDVVVTKLKPYFRKYEYPKKRPPSFYQVTNHSKERP
DVWVDSPEKSIILSITSDIRTIESEVFAAPYSLRFPRIDRVRYDKAWNECLDVQSFIELV
HSSNGTTQRDTEYGSKQDSKPKRTKSSTRGEKRNMSIVPSHLIQTDISSVKGGSLIFSNM
MFYFANVPPSHSLESLHKIIAESGGTFSMNLNNSVTHCVAAGSKGFKFEAAKRHGDIIHY
SWVLDCYEQKKLVCLQPKYFLFLSELTKKKFREEIDEFSDSFYLDLDLEDIKQLLSNISK
SEDVSTVDHYRKKYCPKDKWSFFCGCSIYFHTAIPMKGDWHYILQVALRRFKLEVLMGGG
KVTSNLTCATHLVAFLVPGCRTEFEQILSSFTSVERKILQSKRLYIVNSQWLEDCSDSNK
RLPEDSYSLKPWGIEETTAADCEQDLALEAHLCGDNTQDQNTSFSDKGNRQRSEKVACED
STAFLSQEKGIKRKRGRPVGSGIKNVKPAAKQTRRARPQNVRKPAKICEYESPDESESRD
KRPFESLDFYEKHSEPQENEEQKNVEVAGTVESSEQNKVDNKLKDLKDNDHEIEMTDRYN
DHNNEVVEKLDFSADPLQAMLFDMIPSLGTQKVEQPVNPSVREEKVAETSNAETVPTTTK
KNKVSFLDAANELLKDW
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggagcaaaccaaattcagcgtgttgtgcagcctcttcacgtggacgcagcgg
agcaagtcggcggcgaagaagcgctccaagttccgcaagttcctcgacgtcttctgcatt
gaccgcaacttcttccctgccattcgcctcattctccccaacctcgatcgcgagcgtggc
tcctacggcctcaaggagtccgttctcgccacctctctcatcgacgccctcggcatctcc
cgtgactcccccgatgccctccgactcatcaactggcgtaagggtggcgccgccaccggc
gctacagccggaaatttcgccctcgtcgccgccgaggtgcttcacagcaggcaagggacc
gcttcgggagggttgacgataaaggagttgaatgagttgcttgaccggttggcttccggt
gaaaacagggctgagaaaattttggttctttctacccttatccaaaagacaaatgcacag
gaaatgaagtggattatcatgataatcctgaaagatctaaagctgggaattagtgaaaaa
agcatttttcatgagttccatcctgatgcagaagacttgtttaacgttacctgtgactta
aaattagtatgtgaaaagctaagggatcggaatcagcggcataagcggcaggatattgaa
gttgggaaagctgtgcgcccccaattagctaagagagttgctaatgcaactgaagcatgg
aagaagcttcatgggaaggaagtggttgttgaatgcaaatttgatggcgaccgaattcaa
attcataaaaatggaactgagatacattttttctcaaggaactttattgatcattctgaa
tatgcacatgcaatgtcagaaatcataatgcaaaatattcttgtagataggtgtatcctt
gatggtgaaatgttggtgtgggacacatccttaaaacgctttgctgagtttggctcaaat
caggaaatagccaaggcagcaagagatggacttgatagtgacagacagttatgctatgtt
gcgtttgatatcctttatttcggagatactagtgtgattcaccaatctttgaaggaaaga
catgagatattatgtaaagttgttaggccaatgaagggacgattggaaattttggtacct
aatgctggtatcaacagtcatcttacttcaggtgaaccttgttggtcatttattgctcat
aatgttgatgaagttgagaggtttttcaaggaaaccattgaaaatagagatgagggaatt
gttttaaaggaccgcagctctaaatgggaacctagtgatcgtagtgggaagtggttaaaa
ttgaagcctgaatacattcaagctggctctgatttggatgtacttatcataggtggctac
tatggttctggacgacgtggaggacaggttgctcaattcttggttggccttgcagaacgt
ccatctccaaatgcacaacctaagcggtttatatccttttgcagagttggcactggactc
tctgatgaggagcttgacgttgtagtaaccaaactaaaaccgtacttcagaaagtatgaa
tatccaaagaagaggccaccaagtttttatcaagtaactaatcattcaaaagaaagacct
gatgtgtgggttgatagccctgagaaatcaattattctgtctattaccagtgatatccga
actatagaatctgaggtatttgctgcaccttacagcctgagatttcctaggattgacagg
gtgagatatgacaaagcttggaacgaatgccttgacgttcaatcttttatagaactagtg
cattctagcaatggtaccacacagagggatacagaatatggcagcaaacaggacagtaaa
ccaaaaagaacgaaatcctccactaggggagaaaagagaaacatgtccattgttccttct
catttaattcaaactgatatttccagcgttaaggggggctccttaatattttcaaatatg
atgttctactttgctaatgtgcctccatcgcattctcttgagtccttgcacaaaataatt
gctgagagtgggggaactttttcaatgaatttgaacaactcagtcacacattgtgttgcc
gcaggcagcaagggctttaaatttgaagcagcaaagcgtcatggtgatattattcattat
tcttgggtactagactgttatgaacaaaaaaagcttgtctgcttacagcctaagtacttc
cttttcctatctgaactgacaaagaagaagttccgagaagaaattgatgagttctcagat
tctttctacttggacctagatcttgaagacatcaagcagctcttgagcaatattagtaag
tctgaagatgtcagcactgtcgatcattacaggaaaaaatactgcccaaaggataagtgg
tctttcttttgtggatgttcaatttatttccacactgcaatacctatgaaaggagattgg
cattatatattacaagttgctttgaggagattcaagcttgaagttctcatgggtggtgga
aaagttacctctaatcttacttgtgcaacccatttagtggcctttcttgtgccaggatgt
cgaactgaatttgaacaaatactgagtagtttcacttcagtggaaagaaaaattctccaa
agcaagaggttgtatatagttaattcccagtggctggaagattgttcagacagtaataaa
agattaccagaagactcttacagtttgaagccctggggaatagaagagacaactgctgca
gattgtgaacaggacttggcgttagaggctcatctgtgtggagataatacacaagaccaa
aatacatctttctctgacaagggaaatcgtcaaagaagtgaaaaagttgcatgcgaagac
agtacggccttcttatcccaagagaagggtatcaaaaggaaaagaggaagacctgttggc
agtggtataaaaaatgtaaaaccagctgccaaacaaactcgaagagcacgaccacaaaat
gtgagaaagcctgctaaaatatgtgaatatgaatcaccggatgaaagtgagtctcgtgac
aagagaccatttgaaagtctcgacttttatgagaaacattcagaaccccaggagaatgag
gaacagaaaaatgtcgaagttgctgggacagtggaaagttctgaacaaaataaagttgac
aacaagcttaaggacttgaaggacaatgatcatgaaatagaaatgactgataggtacaat
gaccacaacaatgaggtggtagagaaattagacttttctgctgacccccttcaggcgatg
ttatttgacatgattcctagtcttggcacccaaaaagttgagcaacctgtgaatcctagt
gttagagaagagaaggtagcagaaacctccaatgcagaaacagtgcctacaactacaaag
aaaaataaggttagcttcttggatgctgccaatgagctgctgaaggactggtag
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integrated database retrieval system
