KEGG T01084: 100248564

Vitis vinifera (wine grape): 100248564

Entry

100248564         CDS       T01084

Name

(RefSeq) ATP-dependent helicase rhp16 isoform X1

K15083

DNA repair protein RAD16

Organism

vvi Vitis vinifera (wine grape)

Brite

KEGG Orthology (KO) [BR:vvi00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:vvi03400]
    100248564
DNA repair and recombination proteins [BR:vvi03400]
Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     NER4 complex
      100248564

SSDB

Motif

Pfam:

SNF2-rel_dom Helicase_C ResIII zf-C3HC4_3 zf-C3HC4 zf-RING_5 zf-RING_2 zf-RING_UBOX Prok-RING_4 zf-C3HC4_2

Other DBs

NCBI-GeneID:

100248564

NCBI-ProteinID:

XP_059595886

LinkDB

Position

10:complement(join(941607..941676,941760..941840,941914..941999,943049..943201,943311..943415,944401..944682,944764..944889,947155..947224,954542..954627,954741..954884,956098..956146,957943..958010,958103..958216,959387..960336,960731..960796,960892..960928))

AA seq 828 aa
MVRRSDRIAARPPKSFAALESSEEEEEEEGAGEEEREGDNDRRLQDVFYDDKEGVLEHGP
KKGRKKQQSKPKLQWKVLEKENETFLNCCEIKNHLMNFGDEVILEPTEAPPHFLVPLLSH
QKEWLTWALKQEESPFRGGLLADEAGMGKTIQAIALVLAKKPIHRIDAGPCEALPSSSSQ
TAELPETRCTLIICPPIALSHWEKEIVRCTPQGSTKVLVCHGDERNKMVHDLSSYDFVLT
TYQTVFTEYETSCKLWFPVDLASLCRGWRFGIAEREYEENLKSSKMEAKCASSGDSTCVC
DGGRGKSSCNNKKKNPKQKKNASTLSSKSSLSITREFSLHSIKWQRIILDEAHSITNETT
KAIFSLKSSYKWALSSTPVQNNFQELYSMIRFLQIFPYAYHFCQYCDWKCIMPELCWTHN
WSFCWWQKYVRKPMRQGGDAKRRAKTLVTQKILKSIMLRRTKESRKELCLPTRIVGVRVR
RCALDIREEEYYRTLYEKCRSHFNRYVAARHSWTDWSQIGRLLPRLQKALNHPYLVIYSK
GPVPGRRYRIDLAKDDQVCGICHEAPEDKVVACCKHVFCKTCLQSLAPALGLALCPLCST
PFTGKSAMKKNDSPFTGKSAMKKNDSVLKNNTGSGTTFKDFKSSSLLKRISLNEFQTSTK
IEALREEIRFMVETDGSAKALVFSEFISFLDLIEYSLLKSEINCVKLVMDNTVDARNALV
SRFFKDPDCKILLTTLEAGGVSLNLTIASYVFLMEPFYTAAELKASDRVYRIGQHKTVRI
VKFVAENTIEERMLELQAAKNQISLSALPGSLNLEEELTVEDLNYFFM

NT seq 2487 nt +upstreamnt +downstreamnt
atggttcgcaggtctgatcgcatcgctgcccgtccacctaagagctttgctgccctagaa
agctctgaagaagaagaagaggaggagggtgctggcgaagaagaaagggaaggagacaat
gacaggagacttcaagatgttttttatgatgacaaggaaggagtattggagcatggacca
aagaaagggcgaaaaaagcaacagagcaaaccgaaactacaatggaaagttttggaaaaa
gagaatgagacttttctaaattgttgtgaaataaaaaatcatcttatgaatttcggagat
gaagtgattttggaacctactgaggcgcccccgcactttcttgtacctcttctgagccac
caaaaggaatggctgacttgggctttaaagcaggaggagtcaccttttagaggagggctt
cttgcagatgaggctggaatggggaagacaatccaagccattgcgctggttcttgcaaaa
aagccaatccatagaatagacgctggaccatgtgaagcattgccttcatccagttcacag
acagcagaactgccagaaactagatgcacactcattatctgtcctccaattgctctgtct
cattgggagaaggagattgttcgttgtacaccccaagggagcaccaaagtgctagtctgt
catggggatgaaagaaacaagatggttcatgacttatcgagctatgattttgttttgaca
acttatcagaccgtattcacggaatatgagacctcttgtaagttgtggtttcccgtagat
ctggcttcactctgtagaggatggagatttggaattgctgagagagagtacgaggagaat
ttgaaatcttccaaaatggaagcaaaatgtgcaagttcaggagatagtacatgtgtttgt
gatggtggtagagggaagagttcttgcaataataaaaagaagaatcccaagcaaaaaaag
aatgcaagcactttgtcttccaagtcaagtctatcaatcactagggaattctctctgcac
tcaattaagtggcaacggattattctggatgaggctcactccataacaaacgaaactaca
aaagcaattttttctttaaagtcttcatacaaatgggctttaagtagcactccagttcag
aataatttccaagaactttactcaatgatccgctttttgcaaatatttccttatgcatac
cacttttgtcaatattgtgactggaaatgtatcatgcccgaactttgttggactcataat
tggtccttttgctggtggcaaaagtatgttcgtaaaccaatgagacaaggaggtgatgca
aaaagaagagccaagactttggtaacccaaaagattctgaaaagcataatgctaaggcgt
actaaagaaagtagaaaagaactttgccttccaactagaattgtgggtgttagagtgaga
cgatgtgcattagatattagagaagaagagtattacaggacattatatgaaaaatgtcga
tcacattttaatagatatgttgcggctagacactcgtggacagattggtctcaaataggt
agacttttgcctcggttgcaaaaggcactcaatcacccatatcttgtgatttattctaaa
ggtccagtaccaggaaggagatataggattgatttggcaaaggatgatcaagtctgtggc
atttgtcatgaggctccagaagataaagttgttgcatgttgcaagcatgtcttttgtaag
acttgtctgcagtctcttgctccagcccttggactagctttatgtcccttatgttcaaca
ccatttactggtaaatctgcaatgaagaagaatgattctccatttactggtaaatctgca
atgaagaagaatgattccgtactgaagaacaatactggttccggaacaacctttaaagac
tttaaatcctcaagtctcttaaagagaatttctctcaatgaatttcagacaagcacaaaa
attgaagctttgagggaagaaatcaggttcatggtagaaacagatggttctgcaaaagct
cttgtttttagcgagttcatttctttcttggatttaattgagtactccttgctgaagtct
gaaataaattgtgtaaagctggtcatggataacactgttgatgcaagaaatgcattggta
tcaagattcttcaaagacccagattgcaaaatcttactcacaactttggaagctggaggt
gtttccttgaatctcaccatcgcatcatatgttttcttgatggaacccttctataccgct
gcagagttgaaggctagtgatagagtttaccgaatcggtcagcacaagacagtaagaatt
gtgaagtttgtagctgagaacacaatagaggagaggatgctggagctgcaagcagcgaag
aaccaaatttcactgagtgcattacctggttcgctaaatcttgaggaagaactaacagtt
gaggacctgaactacttcttcatgtaa

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