KEGG   Vitis vinifera (wine grape): 100252197
Entry
100252197         CDS       T01084                                 
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein GMI1 isoform X2
  KO
K23113  structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
vvi  Vitis vinifera (wine grape)
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:vvi03036]
    100252197
   03400 DNA repair and recombination proteins [BR:vvi03400]
    100252197
Chromosome and associated proteins [BR:vvi03036]
 Eukaryotic type
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    100252197
DNA repair and recombination proteins [BR:vvi03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Other NHEJ factors
     100252197
SSDB
Motif
Pfam: HATPase_c_3 SMCHD1_S5
Other DBs
NCBI-GeneID: 100252197
NCBI-ProteinID: XP_010662861
LinkDB
Position
16:join(27414997..27415356,27415459..27415491,27415583..27415669,27415784..27415839,27416985..27417068,27417592..27417664,27420395..27420450,27420564..27420669,27420817..27420885,27421551..27421637,27423218..27423268,27424889..27425024,27425199..27425260,27425329..27425457,27427999..27428089,27428195..27428229,27430922..27430997,27431107..27431289,27431397..27431555,27431758..27431779,27431881..27431995,27432111..27432227,27432536..27432895,27433002..27433111,27440702..27440879,27440987..27441095,27441232..27441326,27442050..27442148,27443336..27443402,27443812..27443897,27443975..27444256,27444328..27444471,27444664..27444778,27445608..27445824,27445919..27446110,27446323..27446643,27446861..27447131)
AA seq 1610 aa
MEEEVPPQRGKKRSIVEISGDNDLGAIYKFKILLPNGTSLGLNLHEHKLSNLLMPLQEFI
GLVRTEYFRTRRQPESPGTRQKIMWKSKDIFLVDASENRMKHTVNFRKFEPHKCHILQLN
DGSGQSADTFKNMWDLTPDTDLLAELPEEYAFETALADLIDNSLQAVWSNGMSERRLISV
DIVEDRISIFDSGPGMDGSDENSIVKWGKMGASLHRSSKAQAIGGKPPYLKPFFGMFGYG
GPIASMHLGRCALVSSKTKESKKVYTLHLEREALLSSSGSDLTWRTSGGIRNPSEEETEK
SPHGSFTKVEIFKPKIERLNVFQLQRKLKDIYFPYIQCDEVCDTGKTNTPVEFQVNGLDL
AEIDGGEVGTTNLHSSNGPEFVLQLRFYGNQDNVATKSPGLRSSQEANARLKCVYFPIVE
GKENLETILEKLEAEGCGTNENYDTFSRVSIRRLGRLLPDARWSLLPFMEHKLKKGDKGQ
LLKRCCRRVKCFIDTDAGFNPTPSKTDLAHHNPFTKALKDFGNKPPEKGREINVEILRDG
KSLTLLQLEKEYLDWISQMHDLYDEEIDSGEDQPVIVVGSLNKKQLGISSDVVRVHEIIR
RKGKSWKRGQKIKVLKGACPGCHKSNVFATLEYILLEGFQGDAGGEARLICRPLSLPDED
GCILAVDDGAASFDCRGSLSLPISVIDSGKCLAVESSEWLFQLEKQRQKAPSTIDILSER
HCLELEVDGALPVDAPVHAGQVPPKEIVAVVRPASFVSSSASKNLDQKYIIKDNFASKNL
DQKYIIKDNLELSMEVKLMDGTKDTKHIYSKCVTPSSRNGFHGLYIFPLGCKFPQLFQKA
GVYTFTVFLKGSSFKSCEKRVLVKALPKVSSWRFSSDIQNTVYSVRAGSCLPPFSIACYD
SYENQIPFTSIPEFIIKSNWNGGVLADFDKMKLELSSDNLTLKVKDVLIESSDLDKIRPS
YATTLVLCPRDELPSISVACEVNPGPLERAIAQPPVSDNQLLPGCVIEELVLEMFDAYGN
HAREGLEVQFNVDGFCFQDHNGLKRKVDDRGCIDLSGLLRVTTGYGKNVSLSVLSGNKVV
FKQELQTEKRELRAASIVPQSCAAGSQLENIVFEIINSKGEVDETVHEEEKHGQFHTLTI
MSDSFYLDGSVRFAFRNGRCIIPTIPLPRKQGDFTFLAAHSCHPELSLAVKVSVVEVLKV
KQEDVQLQYPNENMLLLQDSPAPRHVENSLVESLMNDEKEIEDDICKIGLFIGDNERKLE
LLHKQKGDIEQSIEKLQASVEYDSFNNHRGYLSKKESVMRCIEKKDKSAAAFFCNLSREI
PFQDPVSQLMKDIVGVVALLATVRINRLGRMLAEYLGEDQMLAVVCRSYEAASKLEKYEW
DGKVDREHALYAVAKTFGKPINDRFLVICLENIRPYIGGFQDNDPQRKLNIPNPILPTGE
MPPGFLGYAVNMVDLESHHLLTRTTAGHGLRETLFYCLFGELQVYQTREDMKKACFYARH
GAVSLDGGIMKGNGVISFGCREPQIWFPVANLESPKNVRILEVIEEKRTSLRLVHNEIGK
LTKIINKAQKKLQKKISRCRKLMDRLEPCMKGHYLEYNTNTINSLENSPK
NT seq 4833 nt   +upstreamnt  +downstreamnt
atggaagaagaagttcccccccagaggggcaaaaagaggtccattgtggaaatttctggt
gataatgatctaggtgccatctacaagtttaagattctcttacccaatggcacaagcttg
ggtttgaacttacatgaacataagttgtccaaccttctaatgcctctacaagagttcatt
ggtttggtgagaacagagtacttcagaactcgtcgccaacctgaatcgcctggaacgagg
caaaaaataatgtggaaaagtaaagatatatttcttgtagacgcatctgaaaacaggatg
aaacatactgtcaatttcaggaaatttgagccacataaatgtcatattttacaacttaat
gatgggtcaggtcagagtgctgatacctttaagaacatgtgggatttgacaccagatact
gacctattagcggaacttcctgaagagtatgcatttgagactgctcttgcggatttaatt
gacaattcactgcaagcagtatggtctaatggtatgagtgagaggagattgattagtgtg
gatattgtcgaagataggatttcaatctttgacagtggtcctggaatggatggcagtgat
gaaaactctattgtgaagtggggaaagatgggtgcatcacttcataggtcctccaaggca
caggcaatagggggcaagcctccatacctaaagcccttttttggaatgtttggatatgga
ggtcctattgcatccatgcatcttgggaggtgtgctttagtttcttccaagacaaaggag
tccaagaaagtatatactttacatcttgagagggaggctcttctcagcagttctggttct
gacctcacctggaggacttctggaggcatcaggaatccatcagaagaagaaaccgagaaa
tcacctcatggaagctttacaaaggttgagattttcaagccaaaaattgaaaggttgaac
gtatttcaacttcaacgcaagctgaaggacatctattttccatatattcagtgtgatgaa
gtgtgtgacacaggaaagactaacacaccggttgagtttcaggtcaatgggttagattta
gccgaaattgatggtggggaagttggaactacaaacttgcattcttccaatggccctgag
tttgttctgcagcttcgtttttatggtaaccaagacaatgttgcaaccaaaagccctggt
ttaagatcgtctcaagaagctaatgcacgcctaaagtgtgtttattttcccattgtcgag
ggtaaagagaatcttgaaacgattttggaaaaactagaagctgaaggatgtgggactaat
gaaaattatgatacatttagtcgtgtatctattcggagactcggtcgtttacttccagac
gctcgttggtcactacttcctttcatggaacataagctgaaaaagggagacaaaggccaa
ttgttgaagagatgttgccggagagtaaaatgttttattgatactgatgctggttttaac
cctacaccttctaagacggatttagcacaccataatccttttaccaaggctctaaaggac
tttggtaataagccacctgagaaagggagagagataaatgttgaaatccttagagatgga
aagtcattaactctcttgcaactggaaaaggagtatctagattggatttcccagatgcat
gatctttatgatgaagaaattgactctggtgaggaccaacctgtcattgtcgttggctct
ttgaacaaaaaacagcttggtatttcttctgatgtagtaagggtccatgagattataaga
agaaaaggaaaatcttggaaacgtggccagaaaattaaggttcttaagggagcatgtcca
gggtgtcacaagagcaatgtctttgcgacattggaatatattctgctagaaggttttcaa
ggagatgctggtggagaagctcggctaatatgcaggcccttgagtcttccagatgaggat
ggttgtatccttgcagtggacgatggggctgctagttttgactgccgtggctctctatct
ttacccattagtgtgattgattctggaaagtgccttgccgttgaaagttctgaatggctt
ttccaacttgagaaacaacgtcagaaagctccttcgacaattgacattctgagtgagaga
cattgtctggagttggaggttgatggggcattacctgttgatgctccggttcatgctgga
caagttccgcctaaggaaattgttgctgttgttcgtcctgccagttttgtttcttctagt
gcctcaaagaacttggaccaaaaatatattatcaaggataattttgcctcaaagaacttg
gaccaaaagtatattatcaaggataatttggagttatctatggaagtgaaattgatggat
ggcactaaggataccaaacatatttattcaaaatgtgtgacaccttcatcccgtaatggg
tttcatggtttatatatcttcccactaggatgcaagttcccacagttatttcaaaaagct
ggtgtttacacatttacagtattccttaaaggctcaagttttaagagttgtgaaaaaaga
gtgctagttaaggcattgcctaaggtttcgagttggagattttcaagtgatatacagaat
actgtgtacagtgtaagggctggttcgtgcttaccaccattttctattgcttgttatgac
tcatatgaaaatcagattccattcacatccataccagaatttatcatcaaaagtaactgg
aatggaggggtacttgcagattttgataaaatgaagttggaactttcatccgataatttg
actcttaaagttaaggatgtactaattgaaagcagtgacttggacaagattcgaccgagt
tatgcaactacattggtgctatgtccacgtgatgagttgccctcaatttctgttgcatgt
gaagttaatcctggacctttagaacgtgccatagcccagccaccagtatcagacaaccag
ttgcttcctggatgtgtgattgaggagcttgtattagagatgtttgatgcatatggtaat
catgccagagaagggttggaagttcagtttaatgtggatggattttgtttccaagatcat
aatggtttaaagcgtaaggtggatgatcgtggatgcattgaccttagtggcctcttgaga
gtcacaacagggtatggaaaaaatgtttccctatcagttttatctggtaacaaagtagtt
ttcaagcaagagttgcaaacagagaaaagagagctaagagctgcatcaatagtacctcag
tcttgtgctgctgggtcacaactcgaaaatattgtcttcgaaatcatcaactctaagggt
gaagttgatgaaactgttcatgaggaagagaaacatggacaattccatacgcttacaata
atgtctgattcattttatttggatggttctgtaagattcgctttcaggaatggacgctgc
attattcctactattcctctcccccgaaagcaaggggacttcacctttctagctgctcac
tcctgtcatccagagctatctttggctgtcaaggtttctgttgtggaagtcctaaaagtg
aagcaggaagatgtccaacttcaatatccaaatgaaaacatgttgctcctccaggattca
cctgctccaaggcatgtagagaacagcctagtggagtcactcatgaatgacgagaaggaa
attgaggatgacatttgcaaaattggtttgtttattggagataatgaaaggaaactggaa
ttgcttcataaacagaagggagatattgagcaatccattgagaaattgcaagcttctgta
gaatatgattcattcaacaaccatcggggctacttgtctaagaaagaatcagtgatgaga
tgcattgaaaaaaaggataaatccgcagctgcttttttctgcaatctttcaagagagatt
ccattccaagatccagtatctcagcttatgaaagatatagttggtgtggttgcacttctt
gcaactgttcgtatcaatcggcttggcaggatgttggctgaatatttgggtgaagatcaa
atgcttgcagttgtgtgtagatcctatgaagctgcaagtaagcttgagaagtatgaatgg
gatggaaaagtagaccgtgaacatgctctttatgcagtagcaaaaacatttggaaaaccg
ataaatgaccggtttcttgttatttgcctcgagaatataaggccttacataggagggttt
caggacaatgatcctcagaggaagctgaacattccaaatcctattttacccactggggag
atgcctccagggttcttggggtatgcagttaacatggttgacctagagtcccatcattta
cttacaaggaccactgcagggcatggtcttcgggagacattgttctattgtctatttggt
gagctgcaggtttatcaaaccagggaagacatgaagaaggcttgcttctatgcaagacat
ggtgctgtttctcttgatggtgggattatgaaaggaaatggagtcatttcttttggatgt
agggaaccgcaaatatggtttccagttgctaacctggaatcaccaaaaaatgttagaatc
ctggaagtgatagaggaaaagagaacttctttgaggctggtccacaatgaaataggcaaa
ctgacaaaaatcattaacaaagctcagaagaagttacagaagaaaatttcacggtgtcgc
aagctcatggatcgcttagaaccctgtatgaaaggccactacctggagtacaatacgaat
acaataaacagcctggaaaactcgccaaaatga

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