KEGG   Vitis vinifera (wine grape): 100253751
Entry
100253751         CDS       T01084                                 
Name
(RefSeq) 5'-3' exoribonuclease 4
  KO
K20553  5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
vvi  Vitis vinifera (wine grape)
Pathway
vvi04016  MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04016 MAPK signaling pathway - plant
    100253751
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vvi03019]
    100253751
Messenger RNA biogenesis [BR:vvi03019]
 Eukaryotic type
  mRNA degradation factors
   5'-3' decay
    5' exonucleases
     100253751
SSDB
Motif
Pfam: XRN_M XRN_N zf-CCHC
Other DBs
NCBI-GeneID: 100253751
NCBI-ProteinID: XP_010659929
LinkDB
Position
14:join(6292493..6292687,6305020..6305122,6305201..6305277,6305362..6305553,6305726..6305845,6306019..6306081,6306164..6306286,6306405..6306569,6307011..6307088,6311934..6312020,6326520..6326600,6345373..6345468,6349665..6349735,6350118..6350246,6350402..6350478,6350564..6350604,6350706..6350780,6360246..6360397,6360511..6360615,6360701..6360776,6364194..6364276,6364734..6365472)
AA seq 975 aa
MGVPAFYRWLADRYPLAVMDVVEEEPSEGGAEIDVSRPNPNGMEFDNLYLDMNGIIHPCF
HPDGKPAPTTYDDVFKSIFDYIDHLFSLVRPRRLLYMAIDGVAPRAKMNQQRSRRFRAAK
DAAEAEAEEERLRKEFEVEGKMLSPKEKPETSDSNVITPGTKFMAVLSVALQYYIHSRLN
RNPGWCSTKVILSDSNVPGEGEHKIMSYIRSQRNLLGFNPNTRHCLYGLDADLIMLSLAT
HEVHFSILREMITPPGQQEKCYLCGQVGHLAAECRGIEVVDDTPIHKKKYQFLNIWVLRE
YLQYDLEILNPPFEINFERLLDDFVFLCFFVGNDFLPHMPTLEIREGAINLLMHVYRREF
SAMGGYLTDAGEVLLDRVEHFIESVAVYEDQIFQKRTRIQQALENNEEMKLRTKREASEE
PRAPVEDKVKLGEPGYKERYYTEKFNLSNPEEIDKVRKEIVMKYVEGLCWVCRYYYQGVC
SWQWYYPFHYAPFASDLKDLVDLEITFFLGEPFKPFDQLMGTLPAASASSLPENYRKLMT
DQSSPILDFYPSDFEIDMNGKRYAWQGVAKLPFIDEEKLLAETKKLEVTLTVEEQVRNSV
MFDLLYVHAVHPLATQIIYYYHFYQSSPPLARVIWPIDINASGGMNGYLWLCERNGWRSE
FPSSISGLQNIEHNQVFNVTYVNPPHHKHIPEPPMGVVMPEKVLRPFDIKPLPVLWHEDN
GGRRQQGRERPQVPRAISGPLLGEAAHRLLKNTLNIKPNNTSSGMLLQTPYRNMPSNYVV
NRPRPAGPSGYEKGFNGDSNYYYGHYDNPRGALSIPRFPPSPNNMQGNRQNFRVQDRSTF
QDQYRNSRTGMSALTTEQNFRVQHRPPYQDQFSELSMGMSTLTIEEGVRTRQPIVRPSRM
PSAADTLNTNNQFVQNKSPPAPPSKWIERQATGNAGMIVRQQDNVSAGTYEKPIKKVYQV
KMQHLQDSSDPGSQQ
NT seq 2928 nt   +upstreamnt  +downstreamnt
atgggggttccagcgttttaccggtggctcgcagatcggtaccctctggccgttatggac
gtggtcgaagaagagccgtcggagggtggggctgagattgatgtctccagacctaaccct
aacggcatggagtttgataatctttacttggacatgaatgggatcattcacccttgtttt
catcccgacggcaagcctgcgcctaccacctatgatgatgtgtttaaatcgatatttgat
tacattgaccacctattttcattggttcgcccaagaaggcttctttatatggctattgat
ggggtcgcaccaagagctaaaatgaatcagcaacgctctcggcgcttcagagctgcaaaa
gatgctgctgaggcagaagctgaagaggaaaggttgaggaaagagtttgaggtggaggga
aaaatgctgtctcccaaagaaaagcctgaaacatctgattcaaatgtcatcactcctggg
actaaatttatggctgttctctcagtagcacttcaatattatatacactctaggttgaat
cgcaatcctggctggtgctcaacgaaggttattctttctgattcgaacgttccgggtgag
ggagaacacaaaattatgtcctacattcggtcacagcgtaatcttctgggttttaatcca
aacactcgtcattgtttatatggtttggatgcagatctgattatgctatctttagctaca
catgaggttcatttttcgattttgagagagatgatcactccgcctgggcaacaggagaaa
tgttatctttgtggtcaagttggtcatctggctgctgaatgtcgtggtattgaagtggta
gatgacactccgattcacaaaaaaaaatatcagttcctgaacatatgggtactacgagaa
tatttgcaatatgatttggagattctcaaccctccatttgagattaactttgaacgtctg
ctggatgattttgtatttctctgtttctttgtgggcaatgattttctcccacatatgcct
acattggaaatccgggagggtgctataaatttgctgatgcatgtctataggcgtgagttt
tctgctatgggtggatatcttactgatgcgggtgaggtcttgctggatagagtagaacat
tttattgagtctgttgcagtttatgaagaccaaatatttcagaagcgaactcgtatacaa
caggcactggagaataatgaagagatgaagcttagaacaaagagagaggcttctgaagag
ccacgggctccagttgaagacaaggtgaaattgggggagcctggatacaaagaaagatat
tatactgaaaaatttaatttatccaatccagaggagattgataaagttaggaaagaaata
gttatgaagtacgttgaaggtttatgttgggtttgccggtattactaccaaggtgtttgt
tcttggcaatggtattatccattccactatgctccttttgcttctgatcttaaagatctt
gttgatttggagattacatttttcttgggagagccatttaagccgtttgatcagctcatg
ggaactctaccagctgcaagtgcaagttctcttcctgaaaattacaggaaattgatgact
gatcaatcatcacctatccttgacttctatccttctgattttgaaattgacatgaatggc
aagcgctatgcatggcagggtgttgccaagttgccattcattgatgaggagaaattactt
gctgaaacaaagaagctagaagtcactttaacggtggaagagcaagtccggaatagtgtg
atgtttgatttgctatatgtccatgctgttcatcctttagctacacaaattatttattac
taccatttttatcagagttcacctccacttgcaagagttatatggcctattgacataaat
gccagtggtggaatgaatggatacctatggttatgtgagaggaatggttggagatcagaa
tttccttcttccattagtggattgcaaaatattgaacataaccaagtcttcaatgttacc
tatgttaatcctccacatcacaagcatattccggaacctcccatgggagtggtcatgcct
gaaaaagttttaagacctttcgacataaagcccttgcctgtgttgtggcatgaggacaat
ggtggtcggcgccagcaaggcagagagaggccacaagtgccacgggcaatatctggtcct
ctattgggagaagcagcacaccggctacttaagaacacactgaatatcaaacccaacaac
acatcttctggaatgttgttacaaacaccatatcgtaatatgccaagcaattatgtagta
aaccggccaaggccagctggaccctctgggtatgagaagggcttcaatggagactcaaat
tattactatggacattatgacaacccccgaggtgcactcagtatccctcggttccccccc
tctcccaacaatatgcaaggcaacagacagaatttcagggtgcaagatagatcaacattt
caggaccaatatcgcaactcaaggacaggaatgtctgctttgacaacagagcagaatttc
agggttcaacatagaccaccatatcaagaccagttctctgaattaagtatgggaatgtct
actttgactatagaagaaggggttagaaccaggcaacctatagtaaggccatcaaggatg
ccaagtgcagcagacacactgaacactaataaccagtttgtacagaacaaaagtcctcca
gcaccaccctcaaagtggatagagagacaagcaactggaaatgctggaatgattgttaga
caacaggacaatgtgtcagctggaacatatgagaaacctataaaaaaggtttatcaggtt
aagatgcaacacttgcaggattcatctgatcctggatcccagcaatga

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