Vitis vinifera (wine grape): 100259555
Help
Entry
100259555 CDS
T01084
Name
(RefSeq) ABC transporter I family member 20 isoform X1
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
vvi
Vitis vinifera (wine grape)
Pathway
vvi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100259555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vvi03019
]
100259555
Messenger RNA biogenesis [BR:
vvi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
100259555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
Arf
AAA_15
AAA_23
AAA
AAA_30
ORC-CDC6-like
nSTAND3
AAA_7
Zeta_toxin
Motif
Other DBs
NCBI-GeneID:
100259555
NCBI-ProteinID:
XP_002281168
UniProt:
D7UA72
LinkDB
All DBs
Position
14:complement(join(677434..677673,677803..677880,677962..678114,678236..678331,678499..678618,679185..679318,680177..680345))
Genome browser
AA seq
329 aa
AA seq
DB search
MAVKDISKQTVEINNLRFTYPGIDGQPPPGSTPLIDHFSLTLNSGDRCLLVGSNGAGKTT
ILKILGGKHMVEPHMVRVLGRSAFHDTALTSSGDLCYLGGEWRRDVAFAGFEVPIQMDVS
AEKMIFGVSGIDPQRRAELIKVLDIDLSWRLHKVSDGQRRRVQICMGLLKPFKVLLLDEI
TVDLDVLARADLLKFLRKECEERGATIIYATHIFDGLENWPSHLVYVAHGKLQLAMPMEK
VREMSNLSLMRTVESWLRKERDEGRKRRKERKAVGLPEFESQVEGSRVAGDPARAAVRAL
NNGWAAGRLHSTIAGEENFFLSSNSVLRQ
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atggcagtgaaggacatctcgaagcaaacggtggagatcaacaatctgagattcacctac
ccaggaatcgacggccaacctcctcccggatctacgcctctgatcgaccacttctctctc
actctcaactccggcgaccgctgcctcctcgtcggatccaatggcgcagggaaaactaca
attctgaaaatcttgggtgggaagcacatggtagaacctcacatggttcgagtacttgga
agatcggcttttcatgacactgccttgacatcttctggtgacctctgctatcttggagga
gagtggaggcgagacgttgcctttgctgggtttgaggttccgattcaaatggatgtttca
gctgagaaaatgatatttggagtatcgggtattgatcctcaaagaagagctgaactaatc
aaggttttagatattgatctatcatggagacttcacaaggtgtctgatggtcagagaaga
cgggtgcaaatctgtatgggtctcctcaagccattcaaagttcttcttctagacgagata
acagttgatcttgatgtactggccagggccgaccttctgaagttcctcagaaaggaatgt
gaagagcgaggtgctacaatcatctatgcgacgcatatatttgatggtctggagaattgg
ccatcccatcttgtgtatgtggctcatgggaaattacaattagcaatgccaatggaaaag
gtcagggagatgagcaatttgtcactaatgagaacagtggagagttggctaaggaaggaa
agagatgaggggaggaaaagaaggaaagaacgaaaggcagtcggccttccagaatttgaa
agccaagttgagggcagccgagtggccggggaccctgctcgtgctgccgttcgtgcattg
aacaatggatgggctgctggaagactgcactccaccattgctggtgaagagaattttttc
ttaagttcaaacagtgtcttgagacaataa
DBGET
integrated database retrieval system
