Vitis vinifera (wine grape): 100260023
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Entry
100260023 CDS
T01084
Name
(RefSeq) ABC transporter I family member 19
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
vvi
Vitis vinifera (wine grape)
Pathway
vvi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100260023
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vvi03019
]
100260023
Messenger RNA biogenesis [BR:
vvi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
100260023
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Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
ORC-CDC6-like
nSTAND3
NACHT
AAA_15
AAA_28
SMC_N
AAA_18
AAA
AAA_22
AAA_23
AAA_5
AAA_16
AAA_30
PduV-EutP
AAA_25
SRP54
AAA_33
nSTAND_NTPase5
Zeta_toxin
AAA_24
AAA_14
DUF3584
DUF3744
Motif
Other DBs
NCBI-GeneID:
100260023
NCBI-ProteinID:
XP_002276857
LinkDB
All DBs
Position
7:join(6945514..6945718,6945959..6946119,6950779..6950830,6951416..6951552,6952436..6952522,6952676..6952966)
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AA seq
310 aa
AA seq
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MTDDKTFDIVLPEVGAVTKMAIQSSSSSNSIKVNGLQFAYEGQPPLFLDFNLQISPGSRC
LLVGANGSGKTTLLRILAGKHMVGGRDVVQVLNCSAFHDTHLVCSGDLSYLGGSWSKNIG
SAGEVPLQGDFSAEHMIFGVEGINPVRRDKLVDLLDIDLQWRMHKVSDGQRRRVQICMGL
LHPFQVLLLDEVTVDLDVVARMDLLEFFKEECDQRGATIVYATHIFDGLETWATDLAYVQ
EGDLRKIEKLSELDELKTSANLLSVVESWLRSETKCEKKKPINPPAQIQRTPSPFDSSPF
RSSRHMAYYR
NT seq
933 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacgacaaaacttttgacatcgtgttgccggaagttggtgcagtgacaaaaatg
gcgatccagagcagcagcagcagcaacagcatcaaagtcaatggtctgcagttcgcttac
gaaggccaaccacctctcttcttagacttcaacctccaaatatctcctggttctcgatgc
cttctcgtcggcgccaacggatccgggaaaaccactttgctgaggattttggcagggaag
cacatggttggcgggagagatgtggtgcaggtgttgaattgttcggcttttcacgacacc
catctggtttgtagtggcgatttatcctatttggggggatcttggagtaaaaatattggc
tctgctggagaggttccactccagggagacttctctgccgaacatatgatatttggagtt
gaagggatcaatcctgttagaagagacaagttggttgacctgcttgatattgatctacaa
tggagaatgcataaggtatctgatggacagcggcgtcgagtccaaatatgcatgggtctt
cttcatccgttccaggttcttttactagatgaagtgacagttgatcttgatgttgtggca
aggatggatttacttgaattcttcaaggaagaatgtgatcagcgaggagctacaattgtg
tatgcaacccatatttttgatgggttggagacatgggcaacagatctggcatatgtccaa
gaaggcgatttaaggaagattgagaagttatctgagcttgacgagttgaagacctccgcc
aaccttctttcagtggtggagtcttggctccgttctgaaaccaagtgtgagaaaaagaaa
cccataaatcctcctgctcaaatccaaagaacaccctctccttttgattcttcacctttt
agatcatccagacacatggcatactaccgttga
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