Vibrio vulnificus 93U204: VV93_v1c09080
Help
Entry
VV93_v1c09080 CDS
T03294
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
vvl
Vibrio vulnificus 93U204
Pathway
vvl03030
DNA replication
vvl03410
Base excision repair
vvl03420
Nucleotide excision repair
vvl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vvl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VV93_v1c09080 (ligA)
03410 Base excision repair
VV93_v1c09080 (ligA)
03420 Nucleotide excision repair
VV93_v1c09080 (ligA)
03430 Mismatch repair
VV93_v1c09080 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vvl03032
]
VV93_v1c09080 (ligA)
03400 DNA repair and recombination proteins [BR:
vvl03400
]
VV93_v1c09080 (ligA)
Enzymes [BR:
vvl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
VV93_v1c09080 (ligA)
DNA replication proteins [BR:
vvl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
VV93_v1c09080 (ligA)
DNA repair and recombination proteins [BR:
vvl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
VV93_v1c09080 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
VV93_v1c09080 (ligA)
MMR (mismatch excision repair)
DNA ligase
VV93_v1c09080 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
VV93_v1c09080 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
AIL70002
LinkDB
All DBs
Position
I:981194..983203
Genome browser
AA seq
669 aa
AA seq
DB search
MSESKQQYLEELKQQLHYHAVRYYVEDNPEIPDAEYDRMMRELMAIEAEHPEWISVDSPS
QRVGGVALDSFRQVTHEIPMLSLDNAFSDEELESFLKRAQDRMPSAHIDAFCCEPKLDGL
AVSLLYENGVLVQAATRGDGTTGENITENVRTIASVPLKLQGEGWPSRIEVRGEVFMPKA
GFEKLNDIARKKGEKVFVNPRNAAAGSLRQLDSKITATRPLAFYAYSVGVVEGISLSSSH
YQRFLQLKQWGLPMCPETKLVNGLESVKAFYADILNRRDALPYEIDGVVIKIDDIAIQEK
LGFVARAPRWAIAYKFPAQEELTMLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLH
NADEIERLGVMVGDTVVIRRAGDVIPQIVSVVKDRRKGDEKNIIFPTACPVCHSHVERIE
GEAVTRCSGGLVCQAQRKEALKHFVSRKALDVDGLGDKVIEQLVDKEMVETPADLFTLSA
GVLTVLERMGPKSAQNIVNALNVAKETTLARFLYSLGIREVGEATAANLARHFKTLEAIQ
TATHEQLIEVPDIGEVVARHITAFFAEEKNQRVVQALIEQGIVWPAVEELGSEIPQPLAG
KVVVLTGTLTQLSRGDAKAALERLGAKVTGSVSKKTDIVFAGEAAGSKLTKAQELGVEIQ
TEQDLLALL
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaatccaagcagcaatatttagaagaattaaaacagcaactgcactatcacgca
gttcgttactacgttgaagataatcctgaaattccggatgccgaatatgaccgtatgatg
cgtgagttaatggccattgaagcggagcatccggagtggattagtgttgactcacccagt
cagcgagtgggaggtgtcgctcttgatagtttccgccaagtaacgcatgagatcccgatg
ctttctttggacaacgcctttagcgatgaagagctcgagagtttccttaaacgcgcacaa
gatcgtatgccaagtgctcatattgatgcattttgttgcgagcctaagctcgatggttta
gctgtcagccttctctatgaaaatggcgttttggttcaggccgcgacacggggcgatggc
accacaggcgaaaatattaccgaaaacgtgcgtaccattgcttctgtgccactgaaattg
cagggagaaggttggccttcacgcatcgaagttcgtggtgaagtcttcatgcccaaagca
ggctttgaaaaactcaacgacatcgctcgcaagaaaggcgaaaaagtattcgttaatccg
cgcaatgcagcggcgggaagcttacgccagcttgattcgaagatcaccgcaactcgtccg
ttggccttttatgcgtatagcgtgggcgtcgtagagggcatctcactgtcatcaagccat
taccagcgtttcttgcagctaaagcaatggggcttgcctatgtgccctgagacgaagttg
gttaatgggttggaaagcgttaaggcgttctacgcagacatcttaaatcgacgcgatgca
ttgccatatgaaatcgatggtgtcgtgattaagattgacgacattgcaattcaagagaaa
ttaggttttgtggcacgcgcaccgcgttgggctatcgcgtataagtttcctgcgcaagaa
gaactcaccatgttgaatgacgttgagtttcaagttggcagaacgggggctattacccca
gtcgcaaaattagagcctgtatttgtgggtggtgttaccgtcagtaatgcaacgcttcat
aacgctgatgaaatcgaacgccttggtgtgatggttggtgataccgtcgtgattcgacgc
gccggggatgtgattccacaaattgtttctgtggtgaaagatcgtcgtaaaggagatgaa
aaaaacatcattttcccgaccgcttgccctgtttgtcactcacatgttgaacggattgag
ggagaagcggtgactcgctgctctggcggtttggtgtgtcaagcgcagcgaaaagaggcg
ctgaaacattttgtgtctaggaaggcgctcgatgtcgatgggttgggtgacaaggtcata
gagcagcttgtagataaagaaatggtagagactccagcggacttgtttacgttatctgca
ggcgttttaacggtacttgaacgaatgggaccaaagtcagcgcagaacatcgtcaacgca
ctgaacgttgcgaaagagactacgttggctcgttttctttattctctggggatccgagaa
gtgggcgaggcaaccgcggcaaatttggctcgccattttaaaacactagaagcaatacaa
actgcaacgcatgagcagttaatcgaagttcccgatatcggtgaagtcgtcgctcgtcat
atcacggcattttttgctgaagagaaaaatcaaagagtggtgcaagcacttattgaacag
ggaattgtgtggcccgctgtcgaggagcttggtagtgagatacctcagccattagcaggc
aaagttgtggtactaaccggaaccttgacgcaactcagccgtggcgatgcaaaagcggct
ttggaacgattgggggctaaagtcacgggcagtgtatccaagaaaacagatatcgttttt
gctggtgaagcggcggggtcaaaattaactaaagcgcaagaacttggtgtggaaattcag
acagagcaagatttactcgcacttctgtaa
DBGET
integrated database retrieval system
