Vicia villosa (hairy vetch): 131595089
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Entry
131595089 CDS
T09680
Name
(RefSeq) DNA ligase 4-like
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
vvo
Vicia villosa (hairy vetch)
Pathway
vvo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
vvo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
131595089
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vvo03400
]
131595089
Enzymes [BR:
vvo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
131595089
DNA repair and recombination proteins [BR:
vvo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
131595089
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
DNA_ligase_A_C
BRCT
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
AEP-like
T_Ag_DNA_bind
Motif
Other DBs
NCBI-GeneID:
131595089
NCBI-ProteinID:
XP_058723320
LinkDB
All DBs
Position
LG4:complement(116716988..116731632)
Genome browser
AA seq
1172 aa
AA seq
DB search
MTEQTKFSVLCSLLTWTQRTKSPPKKRAKFRKFLDSFCPDRNYFPAIRLILPNLDRERGS
YGLKESVLATSLIDALGMSKDSPDALRLINWRKGGSKTGANAGNFALVATEVLQLRQGTA
SGGLTIKELNDLLDQLSSSENRGEKTLVLSTLIQKTNAQEMKWIIMIILKDLKLGISEKS
IFHEFHPDAEDLFNVTCDLKLVCEKLRDRNQRHKRQDIEVGKAVRPQLAKRVANAAEAWK
KLHGKEVVAECKFDGDRIQIHKNGTEIHFFSRNFLDHSEYAHAMSDIIIQNILVDRCILD
GEMLVWDTSLNRFAEFGSNQEIAKAARDGLDSNRQKVYTQYALTREWLDIAFDILYFGDT
SVIHQTLKERHEILRKVVRPLNGRLEILLPNNGGINSHRPSGEPCWSLIVQNADEVERFF
KETIENRDEGIVVKDLSSKWEPSDRSGKWLKLKPEYVQAGSDLDVLIIGGYYGSGRHGGE
VAQFLVGLAERPSPNTHPKRFVSFCRVGTGLSDDELEAVVTKLKPYFRKYEYPKKRPPSF
YQVTNHSKERPDVWVDSPEKSIILSITSDIRTIESEVFSAPYCLRFPRIDRVRYDKAWHE
CLDVQSFIELVQSSNGTTQRDTEYGNKKGSKQKQTKSSTKGEKKNMLIVPSHLSQTDVSS
VKGGSLMFSNMMFYFVNVPPSHSLESFHKLVAENGGTFSMNLNNSVTHCVAADSKGFKFE
AAKRRGDIIHYTWVLDCYAQKKLIRLQPKYFLFLSEETKKKLQEEIDEFSDSYYLDLNLE
DIKQLLGNINRSEDVSTVDHYRKKYCPKDKWSVFNGCSIYFRNIMSSLKEDWQYLLELSL
KRLKLEVLMGGGKFTSNINYATHVVALFIPSYHTNHEEEIQSSFTSVERKLLRIKRLHVV
NSKWLEDCLNSCQRLSEDTYSLKSFEIEESTAEDCGHDLAVDSHMVEDNVENQNESFSNK
VSKQSSAKAASQDSLALASQVTRGQRKRGRPTAGRGIKKIKTDGNQARRARSQITKKRAK
ISEYESDESDSLEKRPYEQEADIKEGSAGFHNEQLEPHETEETHNVQSSEGVEDLNVNQH
ENMLATEIGMDDVRNDEQSSQATEKLEIMTDPMQAMLLDMIPSLAMSKVEQPANRRVEEE
KRPETSTNIESSTSKKKKVSFKAMAANLLKDW
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgacagagcaaacaaagttcagcgtcttatgcagtctcctaacatggacgcagcgaaca
aaatcaccgccgaagaaacgcgccaagttccggaagtttctcgactcgttctgccccgat
cggaactacttccccgctattcgcctcattcttcccaaccttgatcgcgaacgcggctcc
tatggtctcaaagagtccgttctcgctacttcgcttattgacgctcttggaatgtctaaa
gattcgcctgatgctctgagactaatcaattggcgaaaaggtggttccaaaactggtgct
aatgccggtaatttcgcacttgtcgccaccgaggtgctgcagcttagacaaggtactgct
tcgggcggattgacgataaaggagttgaatgacctgcttgatcaattgtcttcaagtgaa
aataggggtgagaagactttggttctttcaacccttatccaaaagacaaacgcacaggaa
atgaagtggattatcatgataatcctgaaagatttgaagctaggaattagtgaaaaaagc
atttttcatgaattccatccagatgctgaagacttgtttaatgttacatgtgacttaaaa
ttagtttgtgaaaaactaagggatcggaaccaacgtcataagcggcaggatattgaagtt
ggaaaagctgtgcggcctcaattagctaagagagttgctaacgctgctgaagcatggaag
aagcttcatggtaaggaagtggttgctgagtgcaaatttgatggtgatcgcatccaaatt
cataaaaatggaacagagatacatttcttctcaaggaactttcttgatcattctgaatat
gcacatgcgatgtcagatatcataatacaaaatattcttgtagatagatgcatacttgat
ggtgaaatgttggtctgggatacatccttgaatcgttttgctgagtttggctctaatcag
gaaatagccaaggcagcaagggatggacttgatagtaatagacagaaagtttatacccaa
tatgccttgactcgagaatggttagacattgcatttgatatcctttattttggagatact
agtgtaattcaccaaactttgaaggagcggcatgagattctacgtaaagttgtgaggcca
ttgaatggtcgtttggaaattttactacctaataatggtggtatcaacagtcatcggcct
tctggtgaaccatgttggtcgcttattgttcaaaatgcggatgaagttgaaagatttttt
aaagaaaccattgaaaatagagatgaaggaattgtagtaaaagacctcagctccaaatgg
gaacccagtgaccgcagtggaaaatggctgaaattgaagcctgaatacgttcaagctggc
tctgatctggatgtacttatcataggtggctactatggttccggacgacatgggggagag
gttgctcaattcttggtgggtcttgcagagcgtccatccccaaatacacatcccaagcga
tttgtctccttttgcagagttggtactggactttctgatgatgagcttgaagcagtagta
accaaattgaaaccttacttcagaaagtatgagtatccaaagaagaggccaccaagtttt
tatcaagttactaatcattccaaagaaagacctgatgtgtgggtcgacagccctgaaaaa
tcaattattctgtctataaccagtgatatccgaactatagaatctgaggtattctctgca
ccttactgtctgagatttcctcggattgacagggtgagatatgacaaggcttggcatgaa
tgccttgatgtacaatcatttatagaattggtgcaatctagcaatggtaccacacagagg
gatacagaatacgggaacaagaagggcagtaaacaaaaacaaacaaaatcctctacaaag
ggagaaaagaaaaatatgttaattgttccttctcatttaagccaaacagatgtttccagt
gttaagggaggttccttaatgttttcaaatatgatgttctactttgtcaatgtccctcca
tctcattctcttgagtccttccacaaattagttgctgagaatggcggcactttctcaatg
aatttgaataactccgtcacccattgtgttgcagcagacagcaaagggtttaaatttgaa
gcagcaaaacgtcgtggtgatatcattcattatacctgggtactagattgttatgcacaa
aagaagctcatccgcctacagccaaaatacttcctcttcctatctgaagagaccaagaag
aagttacaagaagaaattgacgagttctcagactcttactacttggatctcaatcttgaa
gacatcaaacagctcttaggcaatattaataggtcagaagatgtcagcactgtcgatcat
tacaggaaaaaatactgcccaaaggataagtggtctgtcttcaatggatgctccatttat
ttccgcaacataatgtcatcactgaaagaagattggcagtatttattagaactttctttg
aagagactcaagcttgaagttctcatgggtggtggtaaattcacctctaatatcaattat
gcaactcatgtagtggctttgttcataccaagttatcataccaaccatgaagaagaaata
cagagcagtttcacttcagttgagagaaaacttctccgaatcaagaggttgcatgtagtt
aattccaagtggttagaagattgtttgaacagttgccaaagattatcagaagacacttat
agcttgaagtcctttgaaatagaagagtcaaccgctgaggattgcggacatgacttggcg
gtggattctcatatggttgaagataatgtagaaaaccaaaatgaatctttctctaacaag
gtaagtaaacagagtagtgcaaaagctgcttctcaagacagtttggctttggcatcacaa
gtgacgcgtggccaaaggaaacgaggaaggccaactgcaggcagaggtattaaaaaaata
aaaacagacggaaaccaagctcgaagagcaagatcgcaaattacaaaaaaacgtgctaaa
ataagtgaatatgaatctgatgaaagtgattctcttgaaaaaagaccatacgagcaagag
gccgacattaaagaaggaagtgctggttttcacaatgaacaattagaaccacatgagact
gaagaaactcacaatgtccaaagttctgaaggagtagaggatttgaatgtcaaccaacat
gaaaatatgttggctactgaaattggaatggatgatgtgcgcaatgatgagcaaagcagt
caggcgactgaaaaacttgaaattatgactgatcctatgcaggcaatgttacttgacatg
attcctagccttgctatgagtaaagttgagcaacctgctaatcgccgtgttgaagaagag
aagcgaccggaaacctccaccaacatagagtcttcgacttcaaagaaaaagaaagttagt
ttcaaggctatggctgctaacctgctcaaggattggtag
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