KEGG   Vicia villosa (hairy vetch): 131605649
Entry
131605649         CDS       T09680                                 
Name
(RefSeq) sm-like protein LSM3B
  KO
K12622  U6 snRNA-associated Sm-like protein LSm3
Organism
vvo  Vicia villosa (hairy vetch)
Pathway
vvo03018  RNA degradation
vvo03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:vvo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    131605649
  09123 Folding, sorting and degradation
   03018 RNA degradation
    131605649
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vvo03019]
    131605649
   03041 Spliceosome [BR:vvo03041]
    131605649
Messenger RNA biogenesis [BR:vvo03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     131605649
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     131605649
Spliceosome [BR:vvo03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    131605649
 Complex C
  U2 snRNP components
    131605649
SSDB
Motif
Pfam: LSM Methyltransf_17
Other DBs
NCBI-GeneID: 131605649
NCBI-ProteinID: XP_058733965
LinkDB
Position
LG5:complement(143561657..>143563125)
AA seq 119 aa
YAGVTPLPPSILSCVSVVDSSTQTLLLVNEPLDLIRLNLDERIYVKLRSDRELRGKLHAF
DQHLNMILGDVEEIVTTVEIDDETYEEIFRDMGNRPTETSVTSSQHLPYIIKSPDRSDI
NT seq 360 nt   +upstreamnt  +downstreamnt
tatgcaggtgtaacaccattaccaccttctattcttagttgtgtaagtgttgttgacagc
agcacacagacattgctactagtgaatgagcctttggatctcatacgactcaatctcgat
gaacgtatctatgtcaaactccgttctgacagagagcttcgtggcaagcttcatgctttt
gatcagcatcttaatatgattcttggtgatgttgaagaaattgttaccactgttgaaatt
gatgatgagacgtatgaagaaatttttagggatatgggaaacagaccgacagaaacttct
gtcacttcaagccaacaccttccttacattattaagtcaccagatagatctgacatttga

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