Vicia villosa (hairy vetch): 131617547
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Entry
131617547 CDS
T09680
Name
(RefSeq) sm-like protein LSM3B
KO
K12622
U6 snRNA-associated Sm-like protein LSm3
Organism
vvo
Vicia villosa (hairy vetch)
Pathway
vvo03018
RNA degradation
vvo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vvo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131617547
09123 Folding, sorting and degradation
03018 RNA degradation
131617547
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vvo03019
]
131617547
03041 Spliceosome [BR:
vvo03041
]
131617547
Messenger RNA biogenesis [BR:
vvo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
131617547
mRNA degradation factors
5'-3' decay
Lsm complex
131617547
Spliceosome [BR:
vvo03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
131617547
Complex C
U2 snRNP components
131617547
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
DUF8170
CwfJ_C_1
Motif
Other DBs
NCBI-GeneID:
131617547
NCBI-ProteinID:
XP_058744802
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All DBs
Position
LG7:complement(78582171..78582956)
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AA seq
135 aa
AA seq
DB search
MCMLNFIPLNSLMLREHCCVSVVDSSTQTLLLVKEPLDLIRLSLDERIYVKLHSDRELRG
KLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRFQQKSSEALKDDPTSSLLIPCILGD
EIYLAMKKIIGLVSS
NT seq
408 nt
NT seq
+upstream
nt +downstream
nt
atgtgcatgcttaatttcattcctttgaacagtttgatgttaagggaacattgttgtgta
agtgttgttgacagcagcacacagacattgctactagtgaaggagcctttggatctcata
cgactcagtctcgatgaacgtatctatgtcaaactccattctgacagagagcttcgtggc
aagcttcatgcttatgatcagcatcttaatatgattcttggtgatgttgaagaaattgtt
accactgttgaaattgatgatgagacatatgaagaaattgttaggtttcaacagaaatca
agtgaagctttaaaggatgatcctacaagctcactcttgataccttgcatcttaggagat
gagatatatttggcaatgaagaaaataataggtcttgtgtcctcctga
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