Vulpes vulpes (red fox): 112925259
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Entry
112925259 CDS
T05911
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
vvp
Vulpes vulpes (red fox)
Brite
KEGG Orthology (KO) [BR:
vvp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
vvp03036
]
112925259 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
vvp03400
]
112925259 (SMCHD1)
Chromosome and associated proteins [BR:
vvp03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
112925259 (SMCHD1)
DNA repair and recombination proteins [BR:
vvp03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
112925259 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMCHD1_S5
SMC_hinge
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
112925259
NCBI-ProteinID:
XP_025861665
UniProt:
A0A3Q7U337
LinkDB
All DBs
Position
Unknown
AA seq
2009 aa
AA seq
DB search
MAAAGGGGGGGGGGGPSAGTGEDGGGDGCRTVYLFDRREKESELGDRVLQVEERSDYTRF
RASVCQTLGISPEEKFVITTTSRKEITCDNFDDTVKDGVTLYLLQSVNQLLLTATKERID
FLPHYDTLVKSGMYEYYASEGQNPLPFALAELIDNSLSATSRNTGIRRIQIKLLFDETQG
KPAVAVIDNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPVPVPRSLNSDISYFG
VGGKQAVFFVGQSARMISKPADSQDVHELVLSKEDFEKKEKNKEAIYSGYIRNRKASDSV
HITNDDERFLHHLIVEEKEKDSFTAVVITGVQPEHIQYLKNYFLLWTRQLAHIYHYYIHG
PKGNEKHTSKEVGPFNNIDIEISMFEKGKAPKIVNLREIEDDMQTLYINTAADSFEFKAH
VEGDGVVEGIIRYHPFLYDRETYPDDPCFPSKLKDEDDDDDCFILEKAARGKRPIFECFW
NGRLIPYTSVEDFDWCTPPKKRGLAPIECYNRISGALFTNDKFQVSTNKLTFMDLELKLK
DKNTLFTRILNGQEQRMKIDREFALWLKDCHEKYDKQIKFTSFKGVITRPDLPSKKQGPW
ATYSAIEWDGKIYKAGQLVKTIKTLPLFYGSIVKFFLYGDHDGEVYATGGEVQIAMEPQA
LYDEIKTVPIAKLDRTVAEKAVKKYVEDEMARLPDRLSVTWPEGDELLPNEIRPAGTPIG
ALRIEILNKKGEAMQKLPGTSHGGSKKLLVELKVILHSSNGNKEIISHISQHGGKWPYWF
KKMENIQKLGNYTLKLQVVLNESNADTYAGRPLPSKAIKFSVKEGKPEKFSFGLMDPPFR
VGVPFNIPLEFQDEFGHTSQLGNDIQPVFEASGLSLHYEEITKGPNCVIRGVTAKGLVNS
CQGKNFNLKVILPGLKEDTQILKIRLLPGPPHRLKVKPDSEILVIENGTAFPFQVEVLDE
SDNITTQPKLIVHCKFLGAPNLPVYVVDCSSSGTSILTGSAIQVQNIKKDQTLKAKIEIP
SCKDVAPVEKTIKLLPSSHVARLQIFSVEGQKAIQIKHQDEVNWIAGDTMHNLIFQMYDE
GEREIHITSTLADKIKVNWTPEINKEHLLQGLLPDVQVPTSVKDMRYCQVSFQDDHVSLE
SAFTVRPLPDEPKHLKCELKGGKTVQMGQELQGEIVVIVTDQYGNQIQAFSPSSLSALGI
AGIGLDSSHLKTTFQENTQSISVKGIKFIPGPPGNKDLCFTWREFSDFIRVQLISGPPAK
VLLIDWPELKESIPVINGRELQNPLIVQLCDQWDNPAPVSQVKISLIKANNLKLTPSNQQ
HKTDERGRANLGVFSVYAPRGEHMMHVRAIYNKNIIEGPIIKLMILPDPEKPIRLNVKYD
KDASFLAGGIFTDFMITVISEDDSIIKNINPARISMKMWQLSNSGNRPPANAETFSCNKI
KDNDKEDGCFYFRDKAIPNKVGTYCIQFGFMMDKANILNSEQIIVDVLPNQPVKLVPKIQ
PATPAVSNVRSVASRTLVRDLHLTITDDYNNHTGIDLVGTVVATIKGSNEEDTDTPLFIG
KVRTLEFPFVKGSAEITNLVLAENSPGRDSTEYFIVFEPQLPALSRTLESYILPFMFYND
VKKQQQMAALTKEKDQLSKNIIMYRSLFEASNQLLDEMKCRVEEAKLKEAQLQNELKTHN
IDIPTTQQMPHIEALLKRKLSEQEELRKKPRRSCTLPNYTKGSGDVLGKIAHLAQIEDDR
AAMVISWHLASDMDCVVTLTTDAARRIYDETQGRQQVLPLDSIYKKTLPDWKRPLPHYRN
GKLYFKPIGDPVFARDLLTFPDNVEHCETVFGMLLGDTIILDNLDAANHYRKEVVKITHC
PTLLTRDGDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPIPKQCLVLGEQIDLLQQYRTAV
NKSNSVIEDLNRQLEYLHTPDMKKKKQELDEQEKNLKLIEQKLGMTPTRKCNDSLRHPAK
VEMTDCPIPPKRMRREASRQNRIITKSDV
NT seq
6030 nt
NT seq
+upstream
nt +downstream
nt
atggcagcggccggcggcggcggcggcggcggcggcggcggcgggccctcagcggggact
ggcgaggacggcggaggcgacggctgcaggacggtgtacttgtttgaccggcgcgagaag
gagtcggagctcggggaccgggtgctgcaggtcgaggagcgctcggactacacaaggttc
cgcgcctctgtgtgtcagacacttggcatttcacctgaagagaaatttgttattacaaca
acaagtaggaaagaaattacctgtgataattttgatgacactgttaaagatggagtcact
ctatacctgctacagtcagtcaatcagctactactaacagctacaaaagaacgaattgac
ttcctacctcactatgatacactggttaaaagtggcatgtatgaatattatgcaagtgaa
ggacaaaatcctttgccatttgctcttgcagaattaattgacaattcattgtctgctact
tctagaaacactggtattagaagaatacagatcaaattgctttttgatgaaacacaagga
aaacccgctgttgcagtgatagataatggaagaggaatgacctctaaacagcttaataac
tgggccgtgtacaggttgtcaaaattcacaaggcaaggtgactttgaaagtgatcattca
ggatatgttcgtccagtaccggtgccacgcagtttaaatagtgatatttcctattttggt
gttgggggcaaacaagctgttttctttgttggacaatcagccagaatgataagcaaacct
gcagattcccaagatgttcatgaacttgtactttctaaagaagattttgagaagaaggag
aaaaataaagaggcaatatatagtggctatatcagaaacagaaaggcatctgattctgtt
cacattacaaatgatgatgaaagatttctacatcatcttatcgtagaggagaaggaaaaa
gatagctttactgctgtggttatcacaggagtacaaccagaacacatacagtacttgaaa
aattatttccttctttggacaagacagttagcgcatatttatcattactatattcatggc
ccaaaaggaaatgaaaaacatacatcaaaagaagttggacctttcaacaacattgatatt
gaaatttctatgtttgaaaaggggaaggcacctaagattgtcaacctaagggaaatagaa
gatgacatgcagacgttgtatataaacacagcagctgatagttttgagttcaaggctcat
gttgaaggagatggtgtagtggaagggattattcgatatcaccctttcttatatgataga
gaaacttaccctgatgatccatgctttccatcaaaattaaaagatgaagatgatgatgat
gattgtttcatacttgagaaagctgcaagagggaaaaggcctatttttgaatgtttttgg
aatggacggctaataccatatacatctgttgaagactttgactggtgtactcctccaaag
aagagagggcttgcaccaattgaatgttacaatagaatatctggtgcattattcaccaat
gacaaattccaggtcagcacaaataaactgacttttatggatcttgagctaaagttgaaa
gataagaacaccctttttacaaggattttaaatggacaggagcagcgaatgaaaattgac
agagaatttgctttatggttaaaggactgtcatgaaaaatatgacaaacaaataaaattt
acatcttttaaaggagtaattacacgtcctgatcttccttctaaaaagcagggcccctgg
gcaacatactcagcaatagaatgggatggaaaaatatacaaagcaggacagttggtcaag
acaatcaagacacttcctctcttttatggaagcatagtaaaattttttctttatggtgat
catgatggagaagtatatgccacaggaggagaggttcagattgcaatggaacctcaggcg
ctatatgatgaaataaaaactgtgccaattgcaaagctcgataggacagttgctgagaaa
gctgtcaaaaaatatgtagaagatgaaatggcaagactccctgatagattgtcagtaact
tggcctgaaggagatgaattattgccaaatgagattaggccagctggaacccccattggt
gcattaagaattgaaatactgaataaaaagggggaagcaatgcaaaagcttccgggaaca
agtcatggaggatcaaagaaactcctggttgagctcaaagttatattacattcttccaat
ggaaataaagaaatcatttcacatattagtcaacatggaggaaaatggccttactggttt
aaaaaaatggaaaatattcaaaagttggggaattatacattgaaattacaagttgtattg
aatgaaagtaatgcagacacttatgcaggaagaccactaccttcgaaagcaattaaattt
tctgttaaagagggtaaaccagaaaagttttcatttggtcttatggatcctccttttcgt
gttggagtcccattcaatatccctctggagtttcaggatgaatttggtcatactagtcaa
ttaggaaatgatattcagccagtatttgaagcaagtggtttatctttacattatgaagaa
ataaccaaaggaccgaattgtgtgattcgaggtgttacagctaagggccttgtaaactct
tgtcaaggcaagaattttaatttgaaggttattctgccgggtttaaaagaagacacacag
attttaaaaattagattactaccaggtccccctcatcgattgaaagtgaaacctgattct
gaaattttagttatagaaaatggaacagctttcccatttcaggtagaagttttggatgaa
tcagacaatataacaacacaaccaaaattgattgttcattgtaagtttttaggtgctcca
aaccttccagtgtatgttgtagattgcagcagttctgggaccagtattttaacaggatct
gcaattcaagtgcagaacattaaaaaagaccagactcttaaagcaaaaattgaaatacct
agctgtaaagatgtggcgcccgtggagaagactattaagttgcttcctagtagccatgtt
gcaagattacagatattcagtgtagaaggacaaaaggcaatccagatcaaacatcaggat
gaggttaattggatagcaggcgatactatgcataatcttatttttcaaatgtatgatgaa
ggagaaagagaaattcatataacatcaactttagcagataaaattaaagttaattggact
cctgagattaacaaagaacacttgctacaaggtctgcttcctgatgtacaagtaccaaca
tctgtgaaagatatgcgttattgccaggtttcattccaagatgatcatgtgtctttggaa
agtgcatttacagtaagaccacttcctgatgaacctaaacatctaaaatgtgaattaaaa
ggaggaaaaacagtacagatgggccaagagcttcaaggagaaatagttgtaatagttaca
gatcagtatggaaatcagattcaagcattttcaccaagttctttatctgccttgggaatt
gctgggattggacttgatagctctcatttgaaaactacctttcaggaaaatacacaaagt
ataagtgtaaaaggcatcaaatttattccaggccctcctggaaataaggatctttgtttt
acttggcgtgaattttctgactttattcgagtgcagctaatttctggaccaccagcaaaa
gttctccttatagactggccagaattaaaggagtccattccagtgataaatggaagagaa
ttacagaatcctctcattgttcagctttgtgatcagtgggataatccagcacctgtatca
caagttaaaataagtctcataaaagctaacaatttaaagctcacgccttcaaatcaacag
cataaaacagatgaaaggggcagggctaatttgggagtgttcagtgtttatgcccctaga
ggagaacatatgatgcatgttagagccatctataacaagaatatcatagaaggacctata
attaagttaatgattcttccagaccctgaaaaacctattcgtctcaatgttaaatatgac
aaagatgcttcctttctagcagggggtattttcactgattttatgattactgttatttct
gaagatgacagtatcattaaaaatattaatccagcacgtatttccatgaaaatgtggcag
ctgtctaacagtgggaaccgaccaccagcaaatgcagaaacatttagttgtaataaaata
aaagataatgacaaggaagatggctgtttctacttcagggataaagcaattcctaacaaa
gtgggaacatactgtatccagtttggttttatgatggataaagcaaatattcttaacagt
gaacagattatagttgatgttctccctaatcagcctgtgaagttagtgcctaaaatccaa
ccagctacaccagctgtttcaaatgttcgctcagttgccagcaggaccttggtcagagat
ttacatcttactattacggatgactacaacaatcataccggaattgatttggttggcact
gtagtagctaccattaaaggatctaatgaggaagatacagatacaccactctttatcggg
aaagtgagaacacttgaatttccctttgtgaaaggttcagctgaaatcacgaatctagtg
ctggcggaaaatagtcctggaagggatagtactgaatattttattgtatttgagcctcag
ctaccagctctgtcaagaacattagaatcatatattctaccatttatgttttacaatgat
gttaagaagcagcaacaaatggcagcacttacaaaagaaaaggaccagttatctaagaat
attataatgtatagaagtttatttgaagccagcaatcagcttcttgacgaaatgaagtgc
cgagttgaagaagcaaaattaaaagaggctcagttgcaaaatgaactaaaaacacataat
attgacatccctacaacacaacagatgccacacattgaagcacttttgaaaagaaagcta
tcagaacaggaagaactgaggaaaaaacctagaagatcgtgtactcttccaaactatact
aaaggcagtggagatgttttgggaaagattgcacacctggcacaaattgaagatgataga
gctgcaatggttatttcttggcatctggcgagtgacatggactgtgtagtcaccctgacc
actgatgctgcacgtcgcatctatgatgaaacccaaggtcgtcagcaggtcttgcccttg
gattctatttataagaagactcttccagattggaaaagacctctacctcattaccgaaat
ggaaaattgtattttaaacccattggagatccagtctttgcccgagatttgttaacattt
ccagataatgtagaacattgtgaaacagtatttggtatgctgttaggagacaccattatt
ttggataatttggatgctgccaatcattatagaaaagaggttgttaaaattacacactgt
cctacactgctcaccagagatggagatcgcattcgaagtaacggaaagtttgggggtctt
cagaataaagctcctccgatggataaacttcggggaatggtatttggagctccaatacca
aaacagtgcctggtcttaggggaacaaatagatcttctccaacagtatcgtactgctgtg
aacaagtcgaacagtgtgatcgaggaccttaaccgtcagttagagtaccttcacactcct
gatatgaagaagaaaaaacaagaacttgatgaacaagaaaagaatctgaaactgatcgag
caaaaactaggtatgactcccacacggaagtgtaatgactcattgcgccatccagcaaag
gttgaaatgacagattgtccaattcctcctaaaagaatgagaagagaagcttcaagacaa
aataggattataaccaaatcagatgtgtga
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integrated database retrieval system
