Vibrio vulnificus YJ016: VV0982
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Entry
VV0982 CDS
T00150
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
vvy
Vibrio vulnificus YJ016
Pathway
vvy03030
DNA replication
vvy03410
Base excision repair
vvy03420
Nucleotide excision repair
vvy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vvy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VV0982
03410 Base excision repair
VV0982
03420 Nucleotide excision repair
VV0982
03430 Mismatch repair
VV0982
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vvy03032
]
VV0982
03400 DNA repair and recombination proteins [BR:
vvy03400
]
VV0982
Enzymes [BR:
vvy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
VV0982
DNA replication proteins [BR:
vvy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
VV0982
DNA repair and recombination proteins [BR:
vvy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
VV0982
NER (nucleotide excision repair)
GGR (global genome repair) factors
VV0982
MMR (mismatch excision repair)
DNA ligase
VV0982
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
VV0982
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
BAC93746
UniProt:
Q7MMT5
LinkDB
All DBs
Position
I:980812..982821
Genome browser
AA seq
669 aa
AA seq
DB search
MSESKQQYLEELKQQLHYHAVRYYVEDNPEIPDAEYDRMMRELMAIEAEHPEWISVDSPS
QRVGGVALDSFRQVTHEIPMLSLDNAFSDEELESFLKRAQDRMPSAHIDAFCCEPKLDGL
AVSLLYENGVLVQAATRGDGTTGENITENVRTIASVPLKLQGEGWPSRIEVRGEVFMPKV
GFEKLNDIARKKGEKVFVNPRNAAAGSLRQLDSKITATRPLAFYAYSVGVVEGISLSSSH
YQRFLQLKQWGLPMCPETKLVNGLESVKAFYADILNRRDALPYEIDGVVIKIDDIVIQEK
LGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLH
NADEIERLGVMVGDTVVIRRAGDVIPQIVSVVKERRKGDENPIVFPTSCPVCHSHVERIE
GEAVTRCSGGLVCQAQRKEALKHFVSRKALDVDGLGDKVIEQLVDKEMVETPADLFTLSA
GVLTVLERMGPKSAQNIVNALNVAKETTLARFLYSLGIREVGEATAANLARHFKTLEAIQ
TATHEQLIEVPDIGEVVARHITAFFAEEKNQRVVQALIEQGIVWPPVEELGSEIPQPLAG
KVVVLTGTLTQLSRGDAKAALERLGAKVTGSVSKKTDIVFAGEAAGSKLTKAQELGVEIQ
TEQDLLALL
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaatccaagcagcaatatttagaagaattaaaacagcaactgcactatcacgca
gttcgttactacgttgaagataatcctgaaataccggatgccgaatatgaccgtatgatg
cgtgagttaatggccattgaagcggagcatccggagtggattagtgttgactcaccgagt
cagcgagtgggaggtgtcgctcttgatagtttccgccaagtgacgcatgagatcccgatg
ctgtctttggacaacgcttttagcgatgaagagctcgagagtttccttaaacgcgcacaa
gatcgtatgccaagtgctcatattgatgcattttgttgcgagcctaagcttgatggttta
gctgtcagccttctctatgaaaatggagttttggttcaggccgcgactcgaggcgatggc
accacaggcgaaaatattaccgaaaacgtgcgtaccattgcttctgtgccactgaaattg
cagggagaaggttggccatcacgcatcgaagtgcgtggtgaagttttcatgccaaaagtg
ggctttgaaaaactcaacgacatcgctcgcaagaaaggcgaaaaagtattcgttaatccg
cgcaatgcagcggcgggaagcttacgccagcttgattcgaagatcaccgcaactcgtccg
ttggccttttatgcgtatagcgtgggcgtcgtagagggcatctcactgtcatcaagccat
taccagcgtttcttgcagttaaagcaatggggcttgcctatgtgccctgagacgaagttg
gttaatgggttggaaagcgttaaggcattctacgcagacatcttaaatcgacgcgatgca
ttgccatatgaaatcgatggtgtcgtgattaagattgacgacattgtgattcaagagaaa
ttaggttttgtggcacgcgcaccgcgttgggctatcgcgtataagtttcctgcgcaagaa
gaactcaccctgttgaatgacgttgagtttcaagttggcagaacgggggctattactcca
gtcgcgaagctggaacctgttttcgtcggtggtgttaccgtcagtaatgcaacgcttcat
aacgctgatgaaatcgaacgccttggtgtgatggttggtgataccgtcgtgattcgacgc
gctggggatgtgattccacaaattgtttctgtggtgaaagagcgccgtaaaggggatgaa
aaccccatcgttttcccgacctcttgcccagtctgtcactcacatgttgaacggattgag
ggagaagcggtaactcgctgctctggcggtttggtgtgtcaagcgcagcgaaaagaggcg
ctgaaacattttgtgtctaggaaggcgctcgatgtcgatgggttgggtgacaaggtcata
gagcagcttgtagataaagaaatggtagagactccagcggacttgtttacgttatctgca
ggcgttttaacggtacttgaacgaatgggaccaaagtcagcccagaacatcgtcaacgca
ctgaacgttgcgaaagagactacgttggctcgttttctttattctctggggatccgagaa
gtgggcgaggcaaccgcggctaatttggctcgtcattttaagacactagaagcgatacaa
actgcaacgcatgagcagttaatcgaagttcccgatatcggtgaagtcgtcgctcgtcat
atcacggcattttttgctgaagagaaaaatcaaagagtggtgcaagcacttattgaacag
ggaattgtgtggccccctgtcgaggagcttggtagtgagatacctcagccattagcaggc
aaagttgtagtactaaccgggaccttgacgcaactcagccgtggcgatgcaaaagcggct
ttggaacgattgggggctaaagtcacgggcagtgtatccaagaaaacagatatcgttttt
gctggtgaagcggcgggttcaaaattaaccaaagcgcaagaacttggcgtggaaattcaa
acagagcaagatttactcgcacttctgtaa
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