Wolbachia endosymbiont strain TRS of Brugia malayi: Wbm0548
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Entry
Wbm0548 CDS
T00234
Name
(GenBank) NAD-dependent DNA ligase, Lig
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
wbm
Wolbachia endosymbiont strain TRS of Brugia malayi
Pathway
wbm03030
DNA replication
wbm03410
Base excision repair
wbm03420
Nucleotide excision repair
wbm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
wbm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Wbm0548
03410 Base excision repair
Wbm0548
03420 Nucleotide excision repair
Wbm0548
03430 Mismatch repair
Wbm0548
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
wbm03032
]
Wbm0548
03400 DNA repair and recombination proteins [BR:
wbm03400
]
Wbm0548
Enzymes [BR:
wbm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Wbm0548
DNA replication proteins [BR:
wbm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Wbm0548
DNA repair and recombination proteins [BR:
wbm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Wbm0548
NER (nucleotide excision repair)
GGR (global genome repair) factors
Wbm0548
MMR (mismatch excision repair)
DNA ligase
Wbm0548
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Wbm0548
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
PTCB-BRCT
Nlig-Ia
DNA_ligase_ZBD
HHH
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AAW71136
UniProt:
Q5GS88
LinkDB
All DBs
Position
complement(720893..722944)
Genome browser
AA seq
683 aa
AA seq
DB search
MADLEKMIEEFTKLRDQISYHDVLYHQKSKPEIADAEYDKLKQKLVEMEGQLPGACVTQD
GVGAAPDEKFSKIKHREPMLSLENAYDEQGVERFLSRIKRFLIEEEIEVFCEPKIDGLSF
SAVYEDGRFVKAATRGDGFIGEDVTRNVATIKGFPRFLQDVQDRLEVRGEIYINNSDFLK
LNKDNEFANPRNAAAGSLKQLDVSITANRPLKYFAYSLIGGKEKSQSEVLNRLESLGFCV
NEHRSLTNNLSGMLEFYNKVYNCRYSLDYDIDGIVYKVNDLILQSRLGSTHKAPRSALAY
KFSAVYAKTKLNKIFIQVGRTGVLTPVADLIPVNIGGVLVSRANLHNQDEIKRKDVREGD
IVTIKRAGDVIPQIVRVDKGSRHADAPGFVFPEICPECGGKVQAEGAAIRCSEELTCKAQ
IIGKLSHFVSKGAFDIFGLGEKQIKFFYDLGLIKQIPDIFNLEERLNEFSLKEQPDWGER
SIANLLNAIQNRRVITLDRFIFSLGIRFIGQVAAELLANYYVSYNNWYNSMIKLLSNDAE
VGVGGVEKKIAKSFSDELVGIDGIGEKVAESLKSFFSKEHNIKMLKDLTDYLQILSVNSN
SSNSVLNNKVIVFTGKLLTMSRGEAKVRAKALGAKVSSNLSAKIDYLVAGEKPGNKYKKA
VELGVGILNEDQWYRMINSEVSE
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atggctgatttggaaaagatgatagaagagtttactaaactgcgagatcagatcagttat
catgatgttttatatcaccaaaagagtaagccagaaatcgctgatgctgagtatgataag
ctgaagcaaaagttagttgaaatggaaggacaacttccgggagcgtgtgtaacacaagat
ggtgttggtgctgcacctgatgagaagttttctaagataaagcatcgagaacctatgctc
tctcttgaaaatgcttatgatgaacaaggtgtagagcgatttttatctagaataaagagg
tttttaattgaagaagaaatagaggtgttctgtgagccaaagattgatgggttatcattt
tctgcagtttatgaagatggaagatttgtcaaagctgcaactcgaggtgacggttttata
ggagaagatgtcacacgcaatgttgcaacaataaaaggctttcccagatttttgcaagat
gtacaagataggttagaagtaagaggtgaaatatacatcaataacagtgactttttaaaa
ttaaataaagacaacgaatttgccaatcctcgaaatgcagctgctggttctctaaagcaa
ttagatgtaagcattacagcaaatagaccgttgaaatattttgcttattctttgattggt
ggaaaagagaaaagtcaaagtgaagtactgaataggcttgagtcacttggtttttgcgta
aatgaacatcggtccttaacgaacaatctgagcggaatgctggagttttataacaaggtt
tataattgccgctatagtttggattatgatattgatggaatagtctataaggtaaatgat
ttgatactacaaagtcgtctaggaagtacccataaagccccgcgctcagcacttgcatac
aagttttctgcagtttatgcaaagacgaagttgaacaaaatatttatacaggtgggtagg
acaggagtattaactccagttgcagatttaataccagtcaatattggcggagtgctagta
agtagggcaaatttgcataaccaagatgaaataaaacgtaaagacgtaagagaaggagat
attgtaacaatcaagagagcaggggacgtgattccccaaattgttagagtagataaaggt
tctcgtcacgcagatgcacctggatttgtatttcctgagatatgccctgaatgtggtggt
aaagtgcaagctgaaggagcggcaataagatgctctgaggaattaacctgtaaagctcaa
ataataggaaaattaagtcattttgtatcgaaaggtgcatttgatatttttggccttggt
gaaaaacagataaagtttttttatgaccttggtctaataaaacaaattcccgatattttt
aacttagaagaaaggttgaatgagtttagtctaaaagaacagcctgattggggcgagagg
tcaatagctaatttattaaatgctatacaaaacagaagggtaataactctagataggttt
atattttctttaggtattagatttattggccaagttgcagcagaattgcttgcaaattat
tatgtttcttataataactggtataattcgatgataaaactgttatcaaatgatgctgaa
gtgggtgtaggtggcgtagagaagaaaatagccaagtcttttagtgatgagctagtaggt
atagatggcataggggaaaaagtggctgagtctttgaaatcttttttttctaaagaacat
aacatcaaaatgttgaaggatcttactgattatcttcaaatcctttctgtgaactccaac
tctagtaattctgttttaaataataaagtcatagtgtttaccggtaaactacttactatg
agtagaggagaggcgaaagtgagagccaaagctctaggagcaaaagtcagctcaaatctt
tctgctaaaattgactacctagttgcaggagaaaaaccaggaaataagtacaaaaaagca
gtggaattaggtgtaggaattttgaatgaagaccagtggtacagaatgataaattcggaa
gtgtccgaataa
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