Candidatus Westeberhardia cardiocondylae: WEOB_165
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Entry
WEOB_165 CDS
T09022
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
wca
Candidatus Westeberhardia cardiocondylae
Pathway
wca03030
DNA replication
wca03410
Base excision repair
wca03420
Nucleotide excision repair
wca03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
wca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
WEOB_165 (ligA)
03410 Base excision repair
WEOB_165 (ligA)
03420 Nucleotide excision repair
WEOB_165 (ligA)
03430 Mismatch repair
WEOB_165 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
wca03032
]
WEOB_165 (ligA)
03400 DNA repair and recombination proteins [BR:
wca03400
]
WEOB_165 (ligA)
Enzymes [BR:
wca01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
WEOB_165 (ligA)
DNA replication proteins [BR:
wca03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
WEOB_165 (ligA)
DNA repair and recombination proteins [BR:
wca03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
WEOB_165 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
WEOB_165 (ligA)
MMR (mismatch excision repair)
DNA ligase
WEOB_165 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
WEOB_165 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
YhfH
SOAR
Motif
Other DBs
NCBI-ProteinID:
CEN32118
UniProt:
A0A0H5BWS1
LinkDB
All DBs
Position
I:complement(196297..198078)
Genome browser
AA seq
593 aa
AA seq
DB search
MKKIKQQILKLRKKLRYWEYLYFYKEESKVSDQKYDKTMQELQILEKKRPDLLTPDSPTQ
ILRKIKTKNIFKKAHHKTPMLSLNSVFTSKDVILFDKKIQNKTKKTITYCCELKIDGLGI
NILYKNGKLIQATTRGDGIIGENVTNNIYTIHDIPKYLNNNFYIPNTIEIRGEIFIQKKD
FKKLNKHMKKKENKIFSNTRNAASGSVRQLNSKITAKRPLSFLAYGINEINTTKISLKSH
WKQLQIIKKLGIPICKYTKKCKNIQEVLNYYETIIKKRKLINFDIDGIVIKIDSLMIQKQ
LGFNNRFPHWAIAYKFSSKKTTTKIKNIKFQVGKSGIITPIANLIPVSINGTIIKHANLY
NIRKIKELGIMNGDTVFIKKSGEIIPKITKVIIKKRTKKISKIIFPKKCPACNSKIHIEH
TSYIMRCNSGIMCIAQKKEKLKHFVSKHAMNIIGIGNKTINKLVDNNLINIPSDLFLLTK
NILINNKILSEKLAENFLFSLQNSKKTTFSRFLYSLNIPYVGKITSTHLSGFYKTIDKLI
HANINSLMKVPTIGKTSAMYIYQYFHEPNNIRIIQELLGKKTGIYFENSKNFK
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaaataaaacaacaaattttaaaattacgaaaaaaactacgatactgggaatat
ttatatttctacaaagaagaatcaaaagtatctgatcaaaaatatgacaaaactatgcaa
gaattacaaattttagaaaaaaaaaggccggatttactcacccctgattccccaacacaa
atacttagaaaaataaaaacaaaaaatattttcaaaaaagcacatcataaaactcctatg
ctatctttaaatagcgtatttacatcaaaagatgtaatattatttgacaaaaaaatacaa
aacaaaactaaaaaaactataacctattgttgtgaacttaaaatagatggtttaggaata
aatattttatataaaaacggaaaattaatacaagcaactacaagaggggatggtataata
ggagaaaacgttacaaataatatatatacaattcatgatattccaaaatatttgaataac
aatttttacataccaaacactatagaaattcgcggagaaatatttatacaaaaaaaagat
tttaaaaaattaaacaaacacatgaaaaaaaaagaaaataaaattttttccaatacaaga
aatgctgcttctggttctgttcgacaattaaattctaaaattaccgcaaaaagaccttta
tcttttctcgcctatggaataaacgaaataaacacaacaaaaatctctttaaaaagtcat
tggaaacaattgcaaataataaaaaaactaggaataccaatttgcaaatacacaaaaaaa
tgtaaaaatattcaagaagtattaaattactacgaaactatcataaaaaaaagaaaatta
ataaatttcgatatagatggaatagtaataaaaatagattctttgatgatacaaaaacaa
ctaggatttaataatcgatttccacattgggcaattgcttataagttttcatcaaaaaaa
acaacaacaaaaataaaaaatataaaatttcaagtaggaaaaagcggaattattacacca
attgctaatttaatcccagtatcaataaacggaacaattataaaacatgcaaatttatac
aatatccgaaaaataaaagaacttggaattatgaatggggacacagtttttataaaaaaa
tccggtgaaattataccaaaaatcactaaagtaataataaaaaaaagaacaaaaaaaatt
tcaaaaattatttttccaaaaaaatgtcctgcatgcaattccaaaattcatatagaacat
acatcgtatattatgcgatgtaattcaggaataatgtgcatagcacaaaaaaaagaaaaa
ttaaaacattttgtttctaaacatgctatgaatattatcggaataggaaacaaaaccatt
aataaattagtagataacaatctaatcaacattccaagtgatttgtttttattaacaaaa
aatatattgataaataacaaaatattaagcgaaaaattagcagaaaattttttattttct
ctacaaaattctaaaaaaactacgttttcgcgttttttatattctttaaatattccttat
gttggaaaaattacctcaacacatttatcaggattttataaaacaattgataaattaatt
catgctaatattaattctttaatgaaagtccctactattggaaaaacttccgcaatgtac
atataccaatattttcacgaacctaataatataagaataatacaagaattacttggcaaa
aaaactggaatatattttgaaaattccaaaaattttaaataa
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