Weissella confusa: C6P13_05785
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Entry
C6P13_05785 CDS
T05951
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
wcf
Weissella confusa
Pathway
wcf03030
DNA replication
wcf03410
Base excision repair
wcf03420
Nucleotide excision repair
wcf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
wcf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
C6P13_05785 (ligA)
03410 Base excision repair
C6P13_05785 (ligA)
03420 Nucleotide excision repair
C6P13_05785 (ligA)
03430 Mismatch repair
C6P13_05785 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
wcf03032
]
C6P13_05785 (ligA)
03400 DNA repair and recombination proteins [BR:
wcf03400
]
C6P13_05785 (ligA)
Enzymes [BR:
wcf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
C6P13_05785 (ligA)
DNA replication proteins [BR:
wcf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
C6P13_05785 (ligA)
DNA repair and recombination proteins [BR:
wcf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
C6P13_05785 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
C6P13_05785 (ligA)
MMR (mismatch excision repair)
DNA ligase
C6P13_05785 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
C6P13_05785 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
zf-NADH-PPase
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QBZ02786
LinkDB
All DBs
Position
complement(1203923..1205959)
Genome browser
AA seq
678 aa
AA seq
DB search
MADINTDIKDLSQEDAATEIAALQADLKQWAREYYENDAPSVEDSVYDVAYNRLEALEAA
FPALVTADSITQQVGGREVKSDLPKVAHPVPMLSLGDVFSFEELADWMATTQKSFHEPLA
YNAELKIDGLAISLVYENGSLVQASTRGDGSIGEDVTANVRQIKRIPKKLNEPLTVEVRG
EVYMPKAAFVTLNEERERDGLPTFANPRNAAAGSLRQLDAKITKQRQLDAFLYFAVDAEN
VLGVTTQAELLARMAELGLPTNPTNAVVSSEADVEAYITNQTATRDDLAYGIDGIVVKVN
NLAYHEELGNTVKVPRWAIAYKFPPEEALTVVRDIEWTVGRTGAVTPTAVMDPVQLAGTT
VSRASLHNPTYLEAKGIRIGDTVTLHKAGDIIPEIGQVILKQRPADSIEYSMPLGCPACG
QELVHVDGEVALRCINPFCPAQVQESLTHFASRDAMNIDGLGPKIVAQLLDKKMVDQVSD
LYRLTFEQLLTLDKFGEVSANKLLTAIENSKANSVERLLFGLGIRNVGAKAAKTIAAKFV
TLDAIAHATAEEISELPGMGLIIGHSIAQYFDTDHAQELVRDFESLGVNTRYTQAVEVAT
DTVFSGKRVVLTGKLELFSRSDATAWLEAQGATVSGSVSKKTDLLIAGADAGSKLTKAQE
LGIEIWSESQLRDSMESK
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggcagatattaatacggatattaaagatctttcacaagaagacgcggcgactgagatt
gctgctttgcaagctgatttgaagcaatgggcacgtgaatattatgaaaacgatgcaccg
tcagttgaagattcagtttatgacgttgcttataaccgactagaagctttggaagctgct
ttcccggcgttggtgacggctgattccatcacgcaacaagttggtggtcgtgaagtgaag
tcagatttgccaaaggttgcccacccggtaccaatgttgtcactgggtgacgtcttttca
tttgaagagttggcagactggatggctacgacacaaaagtcattccacgaaccgttggca
tacaatgcggaattaaagattgatggtttggccatcagtttggtctatgaaaatgggtca
cttgtgcaagcgtcaacacgtggggatggtagcatcggtgaagatgtgaccgctaacgtc
cgacaaatcaagcgtatccctaagaagttgaacgaaccactgactgttgaagtccgtggt
gaagtgtacatgcctaaggctgcctttgtgacgttgaacgaggaacgcgagcgtgacggt
ttgccaacgtttgcaaacccacgtaacgcggcagctggttcattgcgccagttggatgcc
aaaatcacaaagcaacgtcagctagatgcattcttgtattttgcggttgatgctgaaaac
gttttgggtgttacgacgcaagctgagctgttagctcgcatggcagaacttggtttgcca
accaatccaaccaatgcggtggtaagttcagaagcggatgttgaagcttacattacgaat
caaacagcgactcgtgatgacttggcttatggtatcgatggtattgtcgttaaggttaat
aacttggcttaccatgaagaacttgggaacacggtgaaggtgccacgatgggccattgcc
tataagttcccaccagaagaagcgttgacggttgttcgtgatattgaatggacggttgga
cgtactggggcggtcacgccaactgcggtgatggacccagttcaattggccggcacgacg
gtttcacgcgcctctctacacaatccaacataccttgaagcaaagggcattcgtatcggt
gatacggtgacgttgcacaaggctggggatattattccagagattggtcaagtgattttg
aagcaacgtccggcggattcaattgaatatagtatgccgttgggttgcccggcctgtggt
caggaattagtacacgttgatggtgaagttgcccttcgttgcattaacccattctgcccg
gcacaagtacaagaatcattgacgcactttgcatcacgtgatgccatgaacatcgatggc
cttggaccaaagattgtggcacagttgcttgataagaagatggttgatcaagtgtctgat
ttgtatcgtttgacgtttgaacaattgcttacgctggacaagtttggtgaagtgtcagca
aacaagttactaacggccattgaaaattcaaaggctaattcagttgagcgcttgttgttc
ggacttggtatccgtaacgttggtgcgaaggctgcgaagacgattgcggctaagtttgtc
acgttggatgccatagctcatgcaacggccgaagaaatttctgaattgccaggcatggga
ttgattattggccacagtattgcgcaatacttcgatacagatcacgcccaagagctggtt
cgtgatttcgaatcacttggcgttaacacgcgttatacacaagcggttgaagttgcaact
gacacggtcttttctggtaagcgtgtggttttgactggaaagcttgagctgtttagtcgt
tcagatgcgactgcttggcttgaagcgcaaggtgcaacggtgagcggatcggtttctaag
aagactgatttgctgattgccggtgcagatgcgggttcaaagttaacaaaagcccaagaa
cttggcatagagatttggtcagaatcacaattgcgtgatagtatggaaagtaaataa
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