Waddlia chondrophila: wcw_1228
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Entry
wcw_1228 CDS
T01255
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
wch
Waddlia chondrophila
Pathway
wch03030
DNA replication
wch03410
Base excision repair
wch03420
Nucleotide excision repair
wch03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
wch00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
wcw_1228 (ligA)
03410 Base excision repair
wcw_1228 (ligA)
03420 Nucleotide excision repair
wcw_1228 (ligA)
03430 Mismatch repair
wcw_1228 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
wch03032
]
wcw_1228 (ligA)
03400 DNA repair and recombination proteins [BR:
wch03400
]
wcw_1228 (ligA)
Enzymes [BR:
wch01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
wcw_1228 (ligA)
DNA replication proteins [BR:
wch03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
wcw_1228 (ligA)
DNA repair and recombination proteins [BR:
wch03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
wcw_1228 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
wcw_1228 (ligA)
MMR (mismatch excision repair)
DNA ligase
wcw_1228 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
wcw_1228 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
HHH_3
BRCT_2
zf-NADH-PPase
UPF0758_N
RUBY_RBDX
Auto_anti-p27
zf-ribbon_3
Motif
Other DBs
NCBI-ProteinID:
ADI38585
UniProt:
D6YWS4
LinkDB
All DBs
Position
complement(1302826..1304823)
Genome browser
AA seq
665 aa
AA seq
DB search
MKKENYEALCKEVWEHNKRYYIDHAPLINDEEFDLLLKELEEIEKMHPEWIDPNSPTQRV
GEMLTEGFPTALHQTPMLSLANTYSKEEVDEFIKRMEKLAGHKEMAFSCELKMDGIAVAV
TYEQGGFVRAVTRGDGKKGDDISANLKTIPSLPLKLIDGKTLNRIEVRGEVYMPVNAFET
LNKTRKESNEALFANPRNAAGGSLKLLDPKATAQRSLAVVFYGISDPESLGLHSQYDVHG
FLGSLGLPTLEYRRQCFSREEIWNFVEEVRKKRETLSYQIDGIVIKLDDLAQQKRLGSTG
KQPRWAVAYKFAAEQTETRIRDIIVQVGRTGVITPVAELEPVLLAGSTISRATLHNEEEV
ERKDVRIGDSALIEKGGDVIPKVISINPEKRREGSMPWKMPDVCPSCGHPLVRVEGEVAV
RCPNREGCPEQLLRRIAYFVSKEAMEIDHLGEKVVKQLIRIGYVKRPSDIYTLTKEQLLN
LEGFKEKAAERLKQGIENSKHVSFSRFIMALGIKYVGAGTAELLANRSGDIDGLKQLSYE
ELLKINGIGEKAAESVIEYFSDAENLKEIERLKKFGVCPQKVERKTFIGHPFNNKTFVLT
GTLENYTRTAAASLIKERGGKVTGSVSKKTDYLLAGESPGSKLEKAESLGIQVLTESEFV
KMINI
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaagaaaattacgaagctctttgcaaagaagtttgggagcataataaacggtac
tatattgaccatgcgccgctcatcaatgatgaggaatttgatcttcttctaaaagagtta
gaagagattgaaaagatgcatccagaatggatagatccaaactctcctacacagcgtgtc
ggagagatgcttacagaaggttttcccacagccctgcaccaaactcctatgctgtctcta
gcaaatacttatagcaaagaggaagtcgatgagtttatcaaacggatggaaaagttggca
ggacacaaggaaatggcgttttcctgcgagctgaaaatggatggcattgccgttgcagtg
acctatgagcagggaggctttgtacgcgctgtgactcgtggggatggtaaaaaaggagat
gatatctccgctaatctaaaaacaattccttcacttccgttaaagttaattgacggtaag
actcttaatcgcatcgaagtgcgaggagaggtctacatgccagtgaacgcttttgaaaca
ctgaacaaaacacggaaagaatccaatgaggctctctttgccaatcccagaaatgccgca
ggcggttccttgaagcttttagatcctaaagccacagctcaaagaagtttggcggtcgtt
ttctacggcatttccgatcctgagtctttaggattgcactcacaatatgatgtgcatggc
tttcttggttctcttggtttgccaactcttgagtatcgccggcagtgtttttctagagaa
gaaatctggaatttcgtggaagaagtgcgtaagaaaagagaaacgctttcctaccagatt
gatgggattgtgattaagcttgatgatcttgcgcagcaaaaacgattaggttcgacagga
aagcagccccgttgggctgttgcttataaatttgctgcagagcaaactgagacgcgtatc
cgtgatattattgttcaagttggcagaaccggagtcatcactcctgttgcggagctggaa
cctgtcctgctggcaggaagtacaatttccagggcaacactgcacaacgaagaagaggtg
gaaagaaaagatgtccgtatcggtgattcggcgttgattgaaaaaggaggggatgtgatc
cctaaagtgatttcaatcaatcctgaaaaaagaagagaagggagcatgccctggaaaatg
cccgatgtttgtccaagctgcggccatcctcttgttcgagtcgaaggagaagttgccgtc
agatgtccaaatagagagggatgtccggagcagctgctgcgtcggatcgcttactttgtc
agcaaagaagcaatggagatcgatcatttaggagagaaagttgttaagcagctcatccgc
attggatacgtcaaacggccgtcggatatctacacactaacaaaggagcagttgctgaat
ctcgaaggatttaaagaaaaagcagctgaaaggttgaagcagggaatcgaaaattccaaa
catgtctctttttcccgatttatcatggcgttgggtatcaaatacgtaggagctggaaca
gcagagctgcttgctaatcgatctggggatatcgacggccttaagcagctttcttatgag
gagctgcttaaaattaacggaattggggaaaaggcggcggaatcggtcatcgagtacttt
tcggatgcagaaaacctaaaggagatcgaacggttaaaaaaattcggtgtttgtcctcaa
aaggttgaaagaaaaacatttatcgggcatccctttaataacaaaacatttgttttaaca
ggcactttggaaaactacacccgaacagcagcagcctcgttgattaaagaacgaggaggc
aaagtgaccggatcggttagcaaaaaaaccgactatctacttgcaggagagtcgccggga
tctaaactggaaaaagcggaaagcttggggatccaggtgctgactgagtcagagtttgtt
aagatgatcaatatttag
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integrated database retrieval system
