Wolbachia endosymbiont of Cimex lectularius: WCLE_005220
Help
Entry
WCLE_005220 CDS
T03628
Symbol
ligA
Name
(GenBank) DNA ligase NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
wcl
Wolbachia endosymbiont of Cimex lectularius
Pathway
wcl03030
DNA replication
wcl03410
Base excision repair
wcl03420
Nucleotide excision repair
wcl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
wcl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
WCLE_005220 (ligA)
03410 Base excision repair
WCLE_005220 (ligA)
03420 Nucleotide excision repair
WCLE_005220 (ligA)
03430 Mismatch repair
WCLE_005220 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
wcl03032
]
WCLE_005220 (ligA)
03400 DNA repair and recombination proteins [BR:
wcl03400
]
WCLE_005220 (ligA)
Enzymes [BR:
wcl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
WCLE_005220 (ligA)
DNA replication proteins [BR:
wcl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
WCLE_005220 (ligA)
DNA repair and recombination proteins [BR:
wcl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
WCLE_005220 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
WCLE_005220 (ligA)
MMR (mismatch excision repair)
DNA ligase
WCLE_005220 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
WCLE_005220 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
Nlig-Ia
PTCB-BRCT
DNA_ligase_ZBD
RNA_ligase
RsgI_N
Motif
Other DBs
NCBI-ProteinID:
BAO99831
UniProt:
A0A060PZP5
LinkDB
All DBs
Position
521213..523249
Genome browser
AA seq
678 aa
AA seq
DB search
MINLKNLRRELAKLQMQIDYHDVLYHQKNKPEITDAKYDELKRKLTEIKEQLPEIHATQD
SVGAAPDERFSKVEHQEPMLSLENAYDEEGVERFLSKVKRFLIEDEIEILCELKIDGLSF
SAIYEDGRFVKAATRGDGFIGEDVTYNVATIKGFPKFLQGMQGRLEVRGEIYISNSDFLK
LNENNEFANPRNAAAGSLKQLDANVTASRPLRYFAYSLIGGTEKSQSEVLERLEELGFCV
NEHRFLTSSLNGMLKFYNEIYDRRYNLDYGIDGIVYKVNDLVLQNRLGSTHKAPRSALAY
KFSAVYAKTKLNKIFIQVGRTGVLTPVADLVPVNIGGVLVSRASLHNQDEIKRKDIREGD
VVTIKRAGDVIPQIVRVDKGSRHTDAPEFVFPEVCPECGSEVQIEGAAIRCPKEFTCRAQ
IIEKLKHFVSKDAFDIVGLGEKQIKFFYDLGLVKQIPDIFTLGEKLNEFNLEEQSGWGEK
SITNLLNAIQSRKIITLDRFIFSLGIRFIGQVAAALLANYYVSYDNWYSSMIKLLSDDAE
IGIDGAEKKAAKSFSDELVGIDGIGEKVAKSLESFFSKEHNIKMLKDLTDYLQILPVSSN
SSDSILNNKVIVFTGKLLTMSRGEAKVRAKALGAKISSNLSAKTDYLIAGEDPGSKYKKA
VELGIEILDEEQWHKMIN
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgattaatttgaaaaatttgagacgagagcttgctaaattgcaaatgcagatagattat
catgacgtcttataccaccaaaaaaacaaaccggaaatcactgatgctaaatatgatgag
ctaaagcgaaagttaactgagataaaggaacaacttccagaaattcatgcaacacaagat
agtgttggtgctgcacccgatgagagattttccaaagtggagcatcaagaacccatgctt
tctcttgaaaatgcttatgatgaagaaggcgtggagaggtttttatctaaagtaaagagg
tttttaattgaggatgaaatagaaatattatgtgagctaaaaattgatgggctatcgttt
tctgcaatttatgaggatggaaggtttgttaaagctgcaactcgaggcgacggttttata
ggagaagatgtcacctacaacgtagcaacaataaaaggcttccctaaatttttgcaaggt
atgcaaggaaggctagaagtaaggggagaaatatatattagcaatagcgactttttaaag
ttaaatgaaaacaatgagtttgccaatcctagaaatgcggctgctggttctctgaagcag
ttggatgcgaacgttacggcaagtagaccacttagatattttgcttattctttgattggt
ggaacggagaaaagccaaagtgaagtactagagagacttgaggaacttggcttttgcgta
aatgagcatcggttcttaacaagcagtttgaatggaatgctgaagttctataacgagatc
tatgatcgtcgctataacttggattatggtattgatggaatagtatacaaagtcaatgat
ttggtgctgcaaaatcgtctaggaagcactcataaagcaccacgctcagcacttgcgtac
aaattttctgcggtttatgcaaaaacaaagctaaacaagatatttatacaagtaggtaga
acaggggttttaactcctgttgcagatttagtgccagtcaatattggcggagtgctagtt
agtagagcaagcctgcataaccaagacgagataaaacgtaaagatataagggaaggagat
gttgtaacaatcaaaagggcaggagatgtaattcctcagattgttagagtagataaaggc
tctcgtcatacggatgcacctgaatttgtatttcctgaagtatgccctgaatgcggtagt
gaagtacagattgagggagcggcaataaggtgccctaaggaatttacctgcagagctcaa
ataatagaaaaactgaagcattttgtatcgaaagatgcatttgacattgttggccttggt
gaaaagcagataaagtttttttatgaccttggtttggtaaagcaaatcccagatattttt
accttaggagaaaaattaaatgaatttaatctggaagaacagtctggctggggcgagaaa
tcaataactaatttattaaatgctatacaaagcagaaagataataactctagataggttt
atattttctctgggtattagatttattggccaagttgcagcagcattgcttgcaaattat
tatgtctcttatgataactggtatagctcgatgatcaaactgttatcagatgatgctgag
ataggtatagatggtgcagagaagaaagcagccaaatcttttagtgatgagctagtaggt
atagatggcataggagaaaaagtggctaaatctttggaatcatttttttctaaggaacac
aacatcaaaatgttgaaggatcttactgattatcttcaaattctgcctgtcagctccaac
tctagcgattctattttgaataataaagttatagtgtttaccggcaaactacttactatg
agtagaggggaagcaaaagtgagagccaaggctctaggagcaaaaatcagctcaaatctt
tctgctaaaactgactacctcattgcaggagaagatccaggatccaaatataaaaaggca
gtagaattaggtatagaaattttagatgaagagcagtggcacaaaatgataaattag
DBGET
integrated database retrieval system
