Wujia chipingensis: H9Q76_07165
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Entry
H9Q76_07165 CDS
T08109
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
wcp
Wujia chipingensis
Pathway
wcp03030
DNA replication
wcp03410
Base excision repair
wcp03420
Nucleotide excision repair
wcp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
wcp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
H9Q76_07165 (ligA)
03410 Base excision repair
H9Q76_07165 (ligA)
03420 Nucleotide excision repair
H9Q76_07165 (ligA)
03430 Mismatch repair
H9Q76_07165 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
wcp03032
]
H9Q76_07165 (ligA)
03400 DNA repair and recombination proteins [BR:
wcp03400
]
H9Q76_07165 (ligA)
Enzymes [BR:
wcp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
H9Q76_07165 (ligA)
DNA replication proteins [BR:
wcp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
H9Q76_07165 (ligA)
DNA repair and recombination proteins [BR:
wcp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
H9Q76_07165 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
H9Q76_07165 (ligA)
MMR (mismatch excision repair)
DNA ligase
H9Q76_07165 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
H9Q76_07165 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
PTCB-BRCT
HHH_5
DNA_ligase_ZBD
BRCT_2
Nlig-Ia
Peptidase_C14
Zn_Ribbon_TF
DUF8054_C
HHH_RecD2
RUBY_RBDX
zf-IS66
Motif
Other DBs
NCBI-ProteinID:
QNM01052
UniProt:
A0A7G9FR70
LinkDB
All DBs
Position
complement(1539287..1541233)
Genome browser
AA seq
648 aa
AA seq
DB search
MDAKTERMKELVELLNQASKAYYQQDTEIMSNLEYDALYDELAALEQETGLILSKSPTQN
VGYEIISELPKERHPAPMLSLDKTKSVEDLAAWLGDKTGVMSWKMDGLTVVLTYEDGVLV
KAVTRGNGEIGEVITNNAKVFANLPNQIAYKGPLTIRGEAVITYTDFERINATIPDIDSK
YKNPRNLCSGSVRQLNNQITAERNVHFFAFNMLDTGDAEIDATMNSKFDFLTSLGFEVVE
HVDVTAATMQEMVTHFAEKIETNDFPSDGLVLSFDDVEYGKSLGRTAKFPRDSIAFKWAD
EEAETTLRHIEWSPSRTGLINPVAVFDAVSLEGTSVSRASVHNVSIVKQLQLGIGDTIKV
YKANMIIPQISENLTKSGTLEIPDTCPACGGKTEIREDNQAQTLVCPNPACPAKAIKLFT
HFVSRNAMNIDGLSEATLQKFLDCGFIEELYDIYRIDRYETEIVKLEGFGQKSYDNMMES
IEASRTTQLARVLYGLGILNVGTAMAKSICKYFKDDVEAIIHADAAQFAEIEKIGDVIAE
GIVAYFADPNNIRVLREILKEVTLVVEENTAPQDLEGKTFVITGSLNHFANRDELKKLIE
DRGGKVAGSVSSKTTYLINNDVLSSSSKNKKAKSLGIPIISEDDFLQL
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atggatgcaaaaacagagcgtatgaaagaattggtggagctgttaaatcaggcttccaaa
gcatattatcagcaggatacagagatcatgtccaatctggaatatgatgcgttgtatgat
gagcttgcggcgttagagcaggagaccggtctgatcttatccaaaagcccgacacagaat
gtcggttacgagatcatcagtgagctgccgaaggaacggcatccggccccaatgttatct
ttggacaagacaaaaagtgttgaggatctggcagcgtggctgggtgataaaacaggagtc
atgtcgtggaagatggatggactgacggttgtattgacttacgaggatggcgtgcttgtg
aaggcagtcacacgtggaaacggcgagatcggtgaggtcatcacgaacaatgcgaaggta
tttgcgaatctgccgaaccagattgcgtacaaaggtccgcttacgatccgtggcgaggcg
gtcattacctatacagattttgagcgtatcaatgccacgattccggatattgacagcaaa
tataaaaacccgagaaacttatgctccggcagtgtgcggcagctcaataatcagatcaca
gccgagcggaatgtgcatttctttgcgtttaatatgcttgataccggagatgcggaaatc
gatgcaacgatgaattcaaagtttgatttcctgacttcacttggttttgaggttgtggaa
cacgtcgatgtcacagcggcaacgatgcaggagatggtcacacattttgcagagaaaatc
gagacgaacgatttcccatctgatggactcgtgctttcgtttgatgatgtggaatatggt
aaaagtcttggacggacagcgaaattcccgcgggattcgatcgcatttaaatgggcagac
gaggaagcggagacaacgcttcggcatattgagtggagtccgtcccgtaccgggctgatc
aatccggtggcagtctttgatgcggtatcgctcgaaggaacgtctgtgagccgtgccagt
gtccacaatgtgagcattgtgaagcagttacagcttggaatcggtgatacgatcaaggtg
tataaggcgaatatgatcatcccgcagatcagtgagaacctgacgaaatccggtacactc
gagattccggatacttgtccggcgtgtggcggtaagacagagatccgcgaggacaatcag
gcacagacgcttgtatgtccgaatccggcatgcccggcaaaggcaatcaagctattcaca
cattttgtatcacgaaacgcgatgaacatcgatggtttatctgaggcaacgcttcagaag
ttcttagactgcggctttattgaagagttgtatgatatctaccggattgaccgctatgag
acagaaatcgtgaaattagagggctttgggcagaagtcctacgacaatatgatggagagc
atcgaggcaagccgtacgacacagcttgcgcgtgtcctgtatggacttggaattttgaac
gtcggtaccgccatggcaaaatccatctgcaaatatttcaaagatgatgtggaggcaatt
atccatgccgatgcagcgcagtttgccgagattgagaagatcggcgatgtgatcgcagag
ggcattgtggcatatttcgcagatccgaacaatatccgggtactgcgtgagatcttgaag
gaagtgacacttgtcgtcgaggagaatacggcaccacaggatctcgaaggcaagacattt
gtcattactggttcactcaatcattttgcaaaccgggatgaacttaaaaaattgatcgaa
gaccgtggcggaaaagtcgcaggcagtgtttcttcgaagaccacgtacctgatcaataac
gatgtattatcttcctcatcgaagaataaaaaggcgaaatcattgggaattccgattatt
tccgaggatgatttcttgcagttataa
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