Wolbachia endosymbiont of Carposina sasakii: wCauA_04615
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Entry
wCauA_04615 CDS
T07583
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
wec
Wolbachia endosymbiont of Carposina sasakii
Pathway
wec03030
DNA replication
wec03410
Base excision repair
wec03420
Nucleotide excision repair
wec03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
wec00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
wCauA_04615 (ligA)
03410 Base excision repair
wCauA_04615 (ligA)
03420 Nucleotide excision repair
wCauA_04615 (ligA)
03430 Mismatch repair
wCauA_04615 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
wec03032
]
wCauA_04615 (ligA)
03400 DNA repair and recombination proteins [BR:
wec03400
]
wCauA_04615 (ligA)
Enzymes [BR:
wec01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
wCauA_04615 (ligA)
DNA replication proteins [BR:
wec03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
wCauA_04615 (ligA)
DNA repair and recombination proteins [BR:
wec03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
wCauA_04615 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
wCauA_04615 (ligA)
MMR (mismatch excision repair)
DNA ligase
wCauA_04615 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
wCauA_04615 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
zf-NADH-PPase
HHH
TraI_2B
SHOCT
DNA_RNApol_7kD
Motif
Other DBs
NCBI-ProteinID:
QDH18861
UniProt:
A0A4Y6UR88
LinkDB
All DBs
Position
929613..931601
Genome browser
AA seq
662 aa
AA seq
DB search
MTNLEKMREKLQDQINYHNVLYHQKNKPEISDAEYDELKKKLAEIEPEIYATQDSVGAPP
DERFSKVEHQEPMLSLENAYDEQGVEKFLSKIKRFLIEDKIEILCEPKIDGLSFSAIYED
GRFVKAATRGDGFVGEDVTHNVATIKGFPKFLQGVQGRLEVRGEIYIGNSDFLKLNENDE
FANPRNAAAGSLKQLDANITASRPLRYFAYSLIGGAEKSQSEVLNKLEALGFCVNEHQSL
TSSLDGMLKFYNEVYNCRYNLDYDIDGIVYKVNDLVLQNRLGNTHKAPRSALAYKFSAVY
AKTKLNKIFIQVGRTGVLTPVADLVPVNIGGVLVSRASLHNQDEIKRKDIREGDIVTIKR
AGDVIPQIVEVSRDSRLPNTPEFVFPEVCPECGSKVRQVEGEAAVRCPEEFACKAQIIEK
LKHFVSKDAFDIVGLGDKQIEFFYDLGLIKQIHDIFTLEEKLDEFNLEGQSGWGEKSIAN
LLNSIQSRRVITLDRFIFSLGIRFIGQVAAELLADYYVSYNNWYNSMIELSSDNTELVSI
DGIGKKVAESLESFFSKEHNIKMLNDLTACLQILPVSSNSSNSVLNNKIIVFTGKLLAMS
RGEAKVRAKTLGAKVSSHLSAKTDYLIAGEKPGSKYKKAVELGVEILDEDQWHKVISLGV
FK
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atgactaacttagaaaagatgagagaaaaactgcaagatcaaataaattatcataatgtt
ttgtatcaccaaaaaaataagccagaaataagtgatgctgaatatgatgaactgaagaaa
aagttagctgaaatagagccagaaatttatgcaacacaagatagtgttggtgctccacct
gatgagaggttttctaaggtggaacatcaagaacctatgctttctcttgagaatgcttat
gatgaacaaggtgtagagaaatttttgtctaaaataaagaggtttttaattgaggacaaa
atagagatattatgtgagccaaaaattgatgggttgtcgttttctgcaatttatgaggat
ggaagatttgttaaagctgcaactcgaggtgatggttttgtaggggaagatgtcactcac
aatgttgcaacaataaaaggctttcctaagtttttgcaaggtgtgcaaggaagactagaa
gtaagaggtgaaatatacatcggtaacagcgactttttaaagttaaatgaaaacgatgaa
tttgccaatcctcgaaatgcagccgctggttctctgaagcaattggatgcaaacattaca
gcaagtagaccacttagatattttgcttattctttaattggtggagcagagaaaagtcaa
agtgaggtactaaataagcttgaggcacttggtttttgcgtaaatgagcatcagtcctta
acgagtagtttagatggaatgctgaagttctataacgaggtctataactgtcgctataac
ttggattatgatattgatggaatagtctataaagtaaatgatttggtactacaaaatcgt
ctagggaatactcacaaagcaccgcgctcagcacttgcatacaagttttctgcggtttat
gcaaaaacaaagttaaataagatatttatacaggtgggcagaacaggggttttaactcca
gttgcagatttagtgccagtcaatattggtggggtgctagttagtagagcaagtctgcat
aaccaagatgagataaaacgtaaagacataagagagggagatattgtaacaatcaaaaga
gcaggtgatgtaattccccagatcgttgaagtaagcagagattctcgtcttccaaataca
cctgaatttgtgtttcctgaagtatgccctgaatgtggtagtaaagtacgtcaggttgag
ggagaggcggcagtaagatgtcctgaggaatttgcctgtaaagctcaaataatagaaaaa
ctaaagcattttgtatcgaaagatgcatttgacattgttggccttggtgataagcagata
gagtttttttacgaccttggtctgataaaacaaatccatgatatttttactttagaagaa
aaattggatgaatttaatctggaaggacagtctggctggggcgagaaatctatagctaat
ttgttaaattctatacaaagcagaagggtaataactctagataggtttatattttcttta
ggtattagatttattggtcaagttgcagcagaattgcttgcagattattatgtttcttat
aataactggtataattcgatgattgaactgtcatcagataatactgagctagtcagtata
gacggcataggaaaaaaagtggctgaatctttggaatcatttttttctaaggaacataac
atcaaaatgttaaatgatcttactgcttgtcttcaaattcttcctgtgagctccaactct
agtaactctgttttaaataataaaattatagtgtttactggtaagctacttgctatgagt
agaggagaggcaaaagtaagagccaaaactctgggagcaaaggtcagctcacatctttct
gctaaaactgactacctaattgcaggagaaaaaccaggatccaaatataaaaaggcagtg
gaattaggtgtagaaattttagatgaagaccagtggcataaagtgataagtttgggagtg
ttcaaatga
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