Wolbachia endosymbiont of Drosophila simulans wNo: wNo_10370
Help
Entry
wNo_10370 CDS
T02641
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
wed
Wolbachia endosymbiont of Drosophila simulans wNo
Pathway
wed03030
DNA replication
wed03410
Base excision repair
wed03420
Nucleotide excision repair
wed03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
wed00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
wNo_10370 (ligA)
03410 Base excision repair
wNo_10370 (ligA)
03420 Nucleotide excision repair
wNo_10370 (ligA)
03430 Mismatch repair
wNo_10370 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
wed03032
]
wNo_10370 (ligA)
03400 DNA repair and recombination proteins [BR:
wed03400
]
wNo_10370 (ligA)
Enzymes [BR:
wed01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
wNo_10370 (ligA)
DNA replication proteins [BR:
wed03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
wNo_10370 (ligA)
DNA repair and recombination proteins [BR:
wed03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
wNo_10370 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
wNo_10370 (ligA)
MMR (mismatch excision repair)
DNA ligase
wNo_10370 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
wNo_10370 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
Nlig-Ia
PTCB-BRCT
DNA_ligase_ZBD
HHH
RNA_ligase
SHOCT
Motif
Other DBs
NCBI-ProteinID:
AGJ99409
LinkDB
All DBs
Position
1151025..1152980
Genome browser
AA seq
651 aa
AA seq
DB search
MTNLEKMREKLQNQINYHNILYYQKSKPEISDAEYDELKKKLAAIEPEAYATQDSVGAPP
DERFSKMEHQEPMLSLENAYDEQGVEKFLSKIKRFLIADEIEILCEPKIDGLSFSAIYED
GKFVKAATRGDGFVGEDVTHNVATIKGFPKFLQDVQGRLEVRGEIYISNSDFLKLNENNE
FANPRNAAAGSLKQLNANITAKRPLRYFAYSLIGGIEKSQSEILEKLEKFGFCVNEHRSL
TRSLNGMLKFYNEIYDCRYNLDYDIDGIVYKVNDLVLQSRLGSTHKAPRSALAYKFSAIY
AKTKLNKIFIQVGRTGVLTPVADLVPVNIGGVLVSRASLHNQDEIKRKDIREGDVVTIKR
AGDVIPQIVKVDEGSRHTNMPEFVFPDICPECGSKVQIEGVAVRCPEEFNCKAQIVEKLK
HFVSKDAFDIVGLGEKQIKFFYDLSLIRQIPDIFILEERLKEFSLKEHHGWGEKSIANLL
SAIQNRRVITLDRFIFSLGIRFIGQVAAELLANYYVSYDNWYNSMSSNDVELVGIDGIGE
KVAESLKSFFSQERNIKMLNDLTAYLQILPVSSNSSDSFLNNKIIVFTGKLRAMSRGEAK
VRAKVLGAKISSSLSTKTDYLIAGEDPGSKYKKAMELGVEILDEEQWNKLC
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atgactaacttggaaaagatgagagaaaaactgcagaaccaaattaattaccataatatc
ttatattatcaaaaaagtaagccagagataagtgatgctgaatatgatgaactgaaaaaa
aagttagctgcaatagagccagaagcttatgcaacacaagatagtgttggtgctccgcct
gatgagagattttctaagatggaacatcaagaacctatgctttctcttgagaatgcttat
gatgaacaaggtgtagaaaaatttttgtctaaaataaagagatttttaattgcagatgaa
atagagatattatgtgagccaaaaattgatggattgtcattttctgcaatttatgaagat
gggaaatttgttaaagctgcaactcgaggtgacggttttgtaggagaggatgtaactcac
aatgttgcaacaataaaaggctttcctaagtttttacaagatgtgcaaggaagactagaa
gtaaggggtgaaatatatatcagtaacagcgactttttaaagttaaatgaaaataatgaa
ttcgctaatcctcgaaatgcagctgctggttctttaaagcaattgaatgcgaacattaca
gcaaaaaggcctcttagatattttgcttattctttaattggtggaatagagaaaagtcaa
agtgagatactagaaaagcttgagaaatttggtttttgcgtaaatgagcatcgttcctta
acacgtagtttgaatggaatgctaaagttctataacgagatctatgattgtcgttataac
ttggattatgatatcgatgggatagtctataaagtgaatgatttggtgctacaaagtcgt
ctgggaagtacacacaaagcgccacgctcagcgcttgcatataagttttctgcgatttat
gcgaagacaaagttaaataaaatatttatacaggtgggtagaacgggggttttaactcca
gttgcagatttggtaccagtcaatattggcggagtgctagttagcagagcaagtctacat
aaccaagatgagataaaacgtaaagatataagagaaggagatgttgtaacaattaaaaga
gctggagatgtaattcctcaaattgtcaaagtagatgaaggttctcgtcatacaaatatg
cctgaatttgtttttcctgacatatgtcctgaatgtggtagtaaagtgcagattgaagga
gtggcagtaagatgtcctgaagaatttaattgcaaggctcaaatagtagaaaaactaaaa
cattttgtgtcaaaagatgcatttgacattgttggccttggtgaaaaacaaataaagttt
ttttatgatcttagcctaataagacaaattccagacatttttattttagaggaaagatta
aaagagttttccttaaaagagcatcatggttggggcgagaagtcaatagctaatctatta
agtgctatacaaaacagaagagtaatcactctagataggttcatattttctttgggtatc
agatttatcggccaagttgcagcagaattgctcgcaaattattatgtatcttatgataac
tggtataattcgatgtcatcaaatgatgttgagttggtaggtatagatggtataggagaa
aaagtagctgaatctttaaaatcgtttttttctcaggaacgtaacattaaaatgttaaat
gatcttactgcatatctgcaaattcttcccgtgagctccaactctagcgattcttttttg
aataacaaaattatagtgtttactggtaagctacgtgctatgagcagaggggaggcaaaa
gtaagagctaaagttttaggggcaaagatcagttcaagcctttctactaaaactgactat
ttaattgcaggagaagatccaggttcaaaatataaaaaagcaatggaattgggtgtggaa
attttagatgaagaacagtggaacaaattgtgctaa
DBGET
integrated database retrieval system
