Wolbachia endosymbiont of Delia radicum: L2227_07440
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Entry
L2227_07440 CDS
T08243
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
wej
Wolbachia endosymbiont of Delia radicum
Pathway
wej03030
DNA replication
wej03410
Base excision repair
wej03420
Nucleotide excision repair
wej03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
wej00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
L2227_07440 (ligA)
03410 Base excision repair
L2227_07440 (ligA)
03420 Nucleotide excision repair
L2227_07440 (ligA)
03430 Mismatch repair
L2227_07440 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
wej03032
]
L2227_07440 (ligA)
03400 DNA repair and recombination proteins [BR:
wej03400
]
L2227_07440 (ligA)
Enzymes [BR:
wej01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
L2227_07440 (ligA)
DNA replication proteins [BR:
wej03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
L2227_07440 (ligA)
DNA repair and recombination proteins [BR:
wej03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
L2227_07440 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
L2227_07440 (ligA)
MMR (mismatch excision repair)
DNA ligase
L2227_07440 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
L2227_07440 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
Zn_ribbon_NUD
RNA_ligase
SHOCT
Motif
Other DBs
NCBI-ProteinID:
UJQ20951
LinkDB
All DBs
Position
1504341..1506329
Genome browser
AA seq
662 aa
AA seq
DB search
MTNLEKMREKLQDQINYHNVLYHQKNKPEISDAEYDELKKKLAEIEPEIYATQDSVGAPP
DERFSKVEHQEPMLSLENAYDEQGVEKFLSKIKRFLIEDKIEILCEPKIDGLSFSAIYED
GRFVKAATRGDGFVGEDVTHNVATIKGFPKFLQGVQGRLEVRGEIYISNSDFLKLNENDE
FANPRNAAAGSLKQLDANITASRPLRYFAYSLIGGAEKSQSEVLNKLEALGFCVNEHQSL
TSSLDGMLKFYNEVYNCRYNLDYDIDGIVYKVNDLVLQNRLGNTHKAPRSALAYKFSAVY
AKTKLNKIFIQVGRTGVLTPVADLVPVNVGGVLVSRASLHNQDEIKRKDIREGDIVTIKR
AGDVIPQIVEVSRDSRLPNTPEFVFPEVCPECGSKVRQVEGEAAVRCPEEFACKAQIIEK
LKHFVSKDAFDIVGLGDKQIEFFYDLGLIKQIPDIFTLEERLDEFNLEEQSGWGKKSIAH
LLNAIQSRRVITLDRFIFSLGIRFIGQVAAELLADYYVSYDNWYNSMIELSSDNTELVGI
DGIGKKVAESLESFFSKEHNIKMLNDLTACLQILPVSSNSSNSVLNNKIIVFTGKLLAMS
RGEAKVRAKTLGAKVSSHLSAKTDYLIAGEKPGSKYKKAVELGVEILDEDQWHKVISLGV
FK
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atgactaacttagaaaagatgagagaaaaactgcaagatcaaataaattatcataatgtt
ttgtatcaccaaaaaaataagccagaaataagtgatgctgaatatgatgaactgaagaaa
aagttagctgaaatagagccagaaatttatgcaacacaagatagtgttggtgctccacct
gatgagaggttttctaaggtggaacatcaagaacctatgctttcccttgagaatgcttat
gatgaacaaggtgtagagaaatttttgtctaaaataaagaggtttttaattgaggacaaa
atagagatattatgtgaaccaaaaattgatgggttgtcgttttctgcaatttatgaggat
ggaagatttgttaaagctgcaactcgaggtgatggttttgtaggggaagatgtcactcac
aatgttgcaacaataaaaggctttcctaagtttttgcaaggtgtgcaaggaagactagaa
gtaagaggtgaaatatacatcagtaacagcgactttttaaagttaaatgaaaacgatgaa
tttgccaatcctcgaaatgcagccgctggttctctaaagcaattggatgcaaacattaca
gcaagcagacctcttagatattttgcttattctttgattggtggagcagagaaaagtcaa
agtgaggtactaaataagcttgaggcacttggtttttgcgtaaatgagcatcagtcctta
acgagtagtttagatggaatgctgaagttctataatgaagtctataactgtcgctataac
ttggattatgatattgatggaatagtctataaagtaaatgatttggtactacaaaatcgt
ctagggaatactcacaaagcaccgcgctcagcacttgcatacaagttttctgcggtttat
gcaaaaacaaagttaaacaagatatttatacaggtgggcagaacaggggttttaactcca
gttgcagatttagtgccagtcaatgttggtggggtgctagttagtagagcaagtctgcat
aaccaagatgagataaaacgtaaagacataagagagggagatattgtaacaatcaaaagg
gcaggggatgtaattccccagatcgttgaagtaagcagagattctcgtcttccaaataca
cctgaatttgtgtttcctgaagtatgccctgaatgtggtagtaaagtacgtcaggttgag
ggagaggctgcagtaagatgtcctgaggaatttgcctgtaaagctcaaataatagaaaaa
ctaaagcattttgtatcgaaagatgcatttgacattgttggccttggtgataagcagata
gagtttttttacgaccttggtctgataaaacaaattcccgatatttttactttagaagaa
agattggatgaatttaatctggaagaacagtctggttggggcaagaaatcaatagctcat
ttattaaatgctatacaaagcagaagggtaataactctagataggtttatattttcttta
ggtattagatttattggccaagttgcagcagaattgcttgcagattattatgtttcttat
gataattggtataattcgatgattgaactgtcatcagataatactgagctagtaggtata
gacggcataggaaaaaaagtagctgaatctttggaatcatttttttctaaggaacataac
atcaaaatgttaaatgatcttactgcttgtcttcaaattcttcctgtgagctccaactct
agtaactctgttttaaataataaaattatagtgtttactggtaagctacttgctatgagt
agaggagaggcaaaagtaagagccaaaactctaggagcaaaggtcagctcacatctttct
gctaaaactgactacctaattgcaggagaaaaaccaggatccaaatataaaaaggcagtg
gaattaggtgtagaaattttagatgaagaccagtggcataaagtgataagtttgggagtg
ttcaaatga
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