Wolbachia endosymbiont of Frankliniella intonsa: M3L71_03780
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Entry
M3L71_03780 CDS
T09319
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
wend
Wolbachia endosymbiont of Frankliniella intonsa
Pathway
wend03030
DNA replication
wend03410
Base excision repair
wend03420
Nucleotide excision repair
wend03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
wend00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
M3L71_03780 (ligA)
03410 Base excision repair
M3L71_03780 (ligA)
03420 Nucleotide excision repair
M3L71_03780 (ligA)
03430 Mismatch repair
M3L71_03780 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
wend03032
]
M3L71_03780 (ligA)
03400 DNA repair and recombination proteins [BR:
wend03400
]
M3L71_03780 (ligA)
Enzymes [BR:
wend01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
M3L71_03780 (ligA)
DNA replication proteins [BR:
wend03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
M3L71_03780 (ligA)
DNA repair and recombination proteins [BR:
wend03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
M3L71_03780 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
M3L71_03780 (ligA)
MMR (mismatch excision repair)
DNA ligase
M3L71_03780 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
M3L71_03780 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
Nlig-Ia
PTCB-BRCT
DNA_ligase_ZBD
RNA_ligase
HHH
SHOCT
Motif
Other DBs
NCBI-ProteinID:
WGJ62676
LinkDB
All DBs
Position
complement(675684..677639)
Genome browser
AA seq
651 aa
AA seq
DB search
MTDLEKMREKLQNQINYHNILYYQKSKPEISDAEYDELKKKLAVIEPEAYATQDSVGATP
DERFSKVEHQEPMLSLENAYDEQGVEKFLSKIKRFLIADEIEILCEPKIDGLSFSAIYED
GKFVKAATRGDGFVGEDVTHNVATIKGFPKFLQDVQGRLEVRGEIYISNSDFLKLNENNE
FANPRNAAAGSLKQLNANITAKRPLRYFAYSLIGGIEKSQSEVLEKLEKLGFCVNEHRSL
TSSLNGMLKFYNEIYDYRYNLDYDIDGIVYKVNDLVLQSRLGSTHKAPRSALAYKFSAVY
AKTKLNKIFIQVGRTGVLTPVADLVPVNIGGVLVSRASLHNQDEIKRKDIREGDVVTIKR
AGDVIPQIVKVDEGSRHANMPEFVFPDICPECGSKVQIEGVAVRCPKEFNCKAQIVEKLK
HFVSKDAFDIVGLGEKQIKFFYDLELIRQIPDIFILEERLKEFSLKEHHGWGEKSIANLL
SAIQNRRVITLDRFIFSLGIRFIGQVAAELLANYYVSYDNWYNSMSSNDVELVGIDGIGE
KVAESLKSFFSQERNIKMLNDLTACLQILPVSSNSSDSFLNNKIIVFTGKLRAMSRGEAK
VRAKVLGAKISSSLSTKTDYLIAGEDPGSKYKKAMELGVEILYEEQWNKLC
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atgactgacttggaaaagatgagagaaaaactgcaaaatcaaattaattatcataatatc
ttatattatcaaaaaagtaagccagagataagtgatgctgaatatgatgaactgaaaaaa
aagttagctgtaatagagccagaagcttatgcaacacaagatagtgttggtgctacgcct
gatgagagattttctaaggtggaacatcaagaacctatgctttctcttgagaatgcttat
gatgaacaaggtgtagaaaaatttttgtctaaaataaagagatttttaattgcagatgaa
atagagatattatgtgagccaaaaattgatggattgtcattttctgcaatttatgaagat
gggaaatttgttaaagctgcaactcgaggtgacggttttgtaggagaggatgtaactcac
aatgttgcaacaataaagggctttcctaagtttttacaagatgtgcaaggaagactagaa
gtaaggggtgaaatatatatcagtaacagcgactttttaaagttaaatgaaaataatgaa
ttcgctaatcctcgaaatgcagctgctggttctttaaagcaattgaatgcgaacattaca
gcaaaaaggcctcttagatattttgcttattctttaattggtggaatagagaaaagtcaa
agtgaagtactagaaaaacttgagaaacttggtttttgcgtaaatgagcatcgttcctta
acaagtagtttgaatggaatgctaaagttctataacgagatctatgattatcgttataac
ttggattatgatatcgatgggatagtctataaagtgaatgatttggtgctacaaagtcgt
ctgggaagtacacacaaagcgccacgctcagcgcttgcatataaattttctgcggtttat
gcaaagacaaagttaaataaaatatttatacaggtgggtagaacgggggttttaactcca
gttgcagatttggtaccagtcaatattggcggagtgctagttagcagagcaagtctacat
aaccaagatgagataaaacgtaaagacataagagaaggagatgttgtaacaattaaaaga
gctggagatgtaattcctcaaattgtcaaagtagatgaaggttctcgtcatgcaaatatg
cctgaatttgtgtttcctgacatatgtcctgaatgtggtagtaaagtgcagattgaagga
gttgcagtaagatgtcctaaagaatttaattgcaaggctcaaatagtagaaaaactaaaa
cattttgtgtcaaaagatgcatttgacattgttggccttggtgaaaaacaaataaagttt
ttttatgacctggaactaataagacaaattccagacatttttattttagaggaaagatta
aaagagttttccttaaaagagcatcatggttggggcgagaagtcaatagctaatctatta
agtgctatacaaaacagaagagtaatcactctagataggttcatattttctttgggtatc
agatttatcggccaagttgcagcagaattgctcgcaaattattatgtatcttatgataac
tggtataattcgatgtcatcaaatgatgttgagttggtaggtatagatggtataggagaa
aaagtagctgaatctttaaaatcgtttttttctcaggaacgtaacattaaaatgttaaat
gatcttactgcatgtctgcaaattcttcccgtgagttccaactccagcgattcttttttg
aataacaaaattatagtgtttactggtaagctacgtgctatgagcagaggggaggcaaaa
gtaagagctaaagttttaggggcaaagatcagttcaagcctttctactaaaactgactat
ttaattgcaggagaagatccaggttcaaaatataaaaaagcaatggaattgggtgtggaa
attttatatgaagaacagtggaacaaattgtgctaa
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