Williamsia herbipolensis: OG579_05655
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Entry
OG579_05655 CDS
T09708
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
whr
Williamsia herbipolensis
Pathway
whr03030
DNA replication
whr03410
Base excision repair
whr03420
Nucleotide excision repair
whr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
whr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OG579_05655 (ligA)
03410 Base excision repair
OG579_05655 (ligA)
03420 Nucleotide excision repair
OG579_05655 (ligA)
03430 Mismatch repair
OG579_05655 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
whr03032
]
OG579_05655 (ligA)
03400 DNA repair and recombination proteins [BR:
whr03400
]
OG579_05655 (ligA)
Enzymes [BR:
whr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
OG579_05655 (ligA)
DNA replication proteins [BR:
whr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
OG579_05655 (ligA)
DNA repair and recombination proteins [BR:
whr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
OG579_05655 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OG579_05655 (ligA)
MMR (mismatch excision repair)
DNA ligase
OG579_05655 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
OG579_05655 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
HHH_5
DNA_ligase_ZBD
BRCT
PTCB-BRCT
DUF8512
HHH
DUF8259
Motif
Other DBs
NCBI-ProteinID:
WUM21282
UniProt:
A0AAU4K5J6
LinkDB
All DBs
Position
complement(1241576..1243723)
Genome browser
AA seq
715 aa
AA seq
DB search
MDDSTQGTAGPTDGGSADAGVRTQWSELAEEVREHQFRYYVKDSPVITDGEFDALLGRLQ
QLEADHPELATPDSPTALVGGGFATEFAAVDHLERMLSLDNVFDADEMRTWIDRVEADAG
TGLEYLCELKIDGVALALVYENGVLVRGTTRGDGRTGEDVTLNAKTIDDIPHRLTPSDDH
PVPEILEVRGEVFFRVEDFEALNASLVAEGKPPFANPRNSAAGSLRQKNPQITARRRLGM
ICHGIGKLQGYAPESLHEAYLALGAWGLPVSAHTRKLTGATEILSTIAYWGEHRHDVEHE
IDGIVVKVDTTALQRRLGSTSRAPRWAIAYKYPPEEATTTLLDIEVNVGRTGRVTPFAKM
APVLVAGSTVSMATLHNASEVKRKGVLIGDTVTIRKAGDVIPEVLGPVVDLRDGSERAFE
MPTHCPECGTELRHEKEGDADIRCPNSRSCPAQLRERLFHLAGRGSFDIEALGYEAATAL
LSSGVLENEADLFSLTADDLTTVGLFTTKAGALSANGSRLLANLEKAKDAPLWRVLVGLS
IRHVGPSAARALATEFGTLEAIADADVEALAQAEGMGATLAASVVDWFAVDWHREIVDRW
RAAGVRMADERDESTPRTLTGLSIVVTGSLENYSRDGAKEAILVRGGKASGSVSKKTSYV
VVGESPGTKAEKAEQLGVPILDEDGFTALLRDGPPPAPEPEADSDAEAETDAADD
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
gtggacgacagcacccagggcaccgcaggtccgaccgacgggggctcggccgatgcgggt
gtgcgcacgcagtggtcggagttggccgaggaggtccgcgagcaccagttccgctactac
gtcaaggattccccggtcatcaccgacggggagttcgacgcgttgctgggccggttgcag
caactcgaggccgaccaccccgaactcgcgacgcccgactcgcccaccgcactcgtcggc
ggtggcttcgccaccgagttcgccgccgtcgatcatctcgaacggatgctgtcgctggac
aacgtcttcgacgccgacgagatgcgcacctggatcgaccgtgtggaggccgacgcgggt
accgggctcgagtacctctgcgagctgaagatcgacggcgtcgcgttggcgttggtctac
gagaacggcgtcctggtgcgcggcaccacccgcggcgacggtcgcaccggagaggacgtc
accctcaacgccaagacgatcgacgacatcccgcaccggctcacgcccagcgacgaccat
ccggtgccggagatcctcgaggtgcgcggcgaggtcttcttccgggtcgaggacttcgag
gcgctcaacgcctcgctggtcgccgagggcaaacccccgttcgccaacccccgcaactcg
gccgcgggatcgctacgccagaagaacccccagatcaccgcgcggcgtcgcctcgggatg
atctgccacggcatcggcaagctgcaggggtatgcacccgagtcgctgcacgaggcctac
ctcgcgctgggggcgtggggtctgccggtctcggcccacacccgaaaactcaccggcgcg
acggagatcctgtccacgatcgcctactggggcgaacaccgccacgacgtcgagcacgag
atcgacggcatcgtcgtcaaggtcgacaccaccgcactgcagcgtcggctgggctccacc
tcgcgcgctccccgctgggccatcgcctacaagtacccgccggaggaggcgacgacgacg
ctgctcgacatcgaggtcaacgtcggtcgcaccggtcgggtcaccccgttcgcgaagatg
gccccggtcctcgtcgcggggtcgacggtctcgatggcgacgttgcacaacgcctcggag
gtcaagcgcaagggcgtgctgatcggcgacaccgtcaccatccgcaaggccggcgacgtg
atccccgaggtgctcggccccgtcgtggacctgcgtgacggttccgagcgcgcattcgag
atgcccacccactgtcccgagtgcggcaccgagctgcggcacgagaaggagggcgacgcc
gacatccgctgccccaacagtcggtcctgtccggcgcagctgcgcgagcggttgttccac
ctcgccggccggggatcgttcgacatcgaggcgctcggatacgaggcggccaccgccctg
ctctcctcgggcgtgctggagaacgaggccgacctgttctcgctgaccgccgacgacctc
accaccgtcgggttgttcaccacgaaggcgggagcgttgtcggccaacggatcccgactg
ctggccaacctcgagaaggcgaaggacgcgccgttgtggcgggtgctggtcggtctgtcg
atccgccacgtcggaccgtcggcggcccgcgcgttggccaccgagttcggcaccctcgag
gcgatcgccgacgccgacgtcgaggcgctcgcccaggccgaggggatgggggcgacgctc
gcggcgagcgtcgtcgactggttcgccgtcgactggcaccgcgagatcgtcgaccgctgg
cgcgcggcgggcgtccggatggccgacgaacgcgacgaatccacgccgcgcaccctgacc
gggctgagcatcgtggtcaccggttctctcgagaactactcccgcgacggagcgaaggag
gccatcctcgtgcgcggcggcaaggcctcgggttcggtgtcgaagaagaccagctatgtg
gtcgtcggtgaatcgccgggcacgaaggccgagaaggccgaacaactcggcgtaccgatc
ctcgacgaggacggtttcacagcgctgctgcgtgacggaccacccccggcgcccgaaccc
gaagcggattccgacgccgaggcggagacggacgcggccgacgactag
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