Wallemia ichthyophaga: J056_004049
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Entry
J056_004049 CDS
T03457
Name
(RefSeq) kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
wic
Wallemia ichthyophaga
Pathway
wic03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
wic00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
J056_004049
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
wic03041
]
J056_004049
Spliceosome [BR:
wic03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
J056_004049
Complex C
U5 SnRNP specific factors
J056_004049
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_IV
EFG_C
GTP_EFTU_D2
EFG_III
AraR_C
EFL1
MMR_HSR1
EF-G_D2
Septin
SRPRB
Motif
Other DBs
NCBI-GeneID:
20377001
NCBI-ProteinID:
XP_009267533
UniProt:
R9AI09
LinkDB
All DBs
Position
Unknown
AA seq
991 aa
AA seq
DB search
MDDNLYDEFGNYLGDDLDSDEDDEDQEMVRSQPAQPAHAPLEGYDDDEDDDPEIAAQNDL
RISTVAQVDANPQNQVVLHEDKRYYPSAEETYGPDVETRVEEEDTQLISEPIVQPIKERK
FQIVEKDLPETRFDRNFMVDLMYYPEMVRNVVVIGHLHHGKTSLLDLLTFQTHKLIWNAD
APERYTDLHKLERAREISIKSTPMSFVLESTIGKSILVNAIDTPGHTNFVDEVANATRLA
DGAIVVVDVVEGVMAGTELSLKHILQQGLKPVLVLNKMERLFLELRLPPSEAYFKVKRTI
EEVNSVVSSVIPDESSRLSPELGNVAFASTDMHWSFTLQSFSQMYADTFGSFDVNAFAAR
LWGNIFFDAEKRKFVKKAPQGSPRSFVHFVLEPLYKLYTQVIGEDVSDLANTLAGLGITL
KPSAYKMDARPLLKLCLDQFFGPSTGIVDMLLEHIPSAAEGNATKVYRHFTGPLDTPLAQ
GMLACDSKAPAVIHVTKLYTTVDAQGFHAFGRVMSGRARVGDSVKVLGEGYSVEDEEDMA
TATIEDVWVSEARYKVAAQEIPAGSWVLLGGVDDSIVKTSTVVSNAVASPDELHIFRPIA
HITESILKVAVEPLNPPELPRLLDGLRRVNKSYPLLTTKVEESGEHIILGTGEIYLDSVL
HDLRTLFAEIEIKVSDPVVKFCETVVETSAIKCYADTPNKKNKITIIAEPLEKGIAEDIE
KRRVGMWMTNKERGKFFQDKYGWDALASRSIWTFGPEEDGPNVLIDDTLPSEVDKVLLGN
VKESIKQGFQWAAREGPLADEPLRGVKFRIMDAQVAEEPIYRGGGQMIPTARRVCYSSFL
MATPRLMEPVYYVEMLTTAESVPLVYQLLAKRRGHVTKDEPKAGSPLYVVKALIPVMDAN
GFETDLRTQSAGTAFALEIFDHWAIVPGDPVDSGIQLRLLEPAPAQHLARDFMLKVRRRK
GLGDGQNLMAKYLDDDFVLNIVAAGKSDLLF
NT seq
2976 nt
NT seq
+upstream
nt +downstream
nt
atggacgataatttgtacgacgaatttggtaattacctgggagatgacctcgattctgat
gaggacgatgaggatcaagagatggtccgctcacagccagcccagccagcccacgctcct
ttagaaggctacgacgatgacgaggatgacgaccccgaaatcgccgctcaaaacgatctt
cgcatctccactgtagcccaagttgacgccaacccacaaaaccaagtagtcttgcacgaa
gacaagcgctattatccttctgctgaggagacttacgggccagacgttgaaacccgcgtc
gaagaagaagacactcagctcatctcggagccaatcgtccagccaatcaaagagagaaag
ttccaaatcgtggagaaagatctccctgaaacccgttttgatagaaatttcatggtcgac
ttaatgtactacccagaaatggttagaaacgtcgtcgttatcggccacctccaccacggc
aagacatcactcttagatctcctcactttccaaactcacaaactcatttggaatgcagat
gcccctgaaagatacactgaccttcataaacttgaacgcgcaagagaaatttcaataaaa
tctactccaatgtcctttgtcttggaatccactatcggtaaatctatcctagtaaatgca
atcgacactccaggccacacgaacttcgttgacgaggtggcaaatgctactagactcgct
gatggtgcgatcgtggtggtcgatgttgtagaaggagttatggcaggcactgaactgtcc
ttaaaacatattctacagcaaggactcaagcctgtcttagtactcaacaagatggaacgc
cttttcttagaactccgtttgcctccctcagaagcttatttcaaggtgaaacgcacgatt
gaggaggtaaacagtgttgtttcaagcgtcatccccgacgagagctcgcgtctttctcca
gaactcggcaatgtcgctttcgcttcaacagacatgcactggtctttcaccctccagtcc
ttctcacagatgtatgcagatacctttggttcattcgatgtaaacgcattcgctgctcgc
ctctggggcaatatcttcttcgatgctgagaagaggaaattcgtcaagaaagcgccacaa
ggctcgccacgctcattcgtacactttgtcttggagcctctttataagctttatacgcag
gtgattggagaagatgtcagcgatctcgccaacactctagccggactgggtataacactt
aagccatctgcgtacaaaatggatgcacgcccattgctcaaactttgtctcgaccaattc
ttcggtccatctacaggcatcgtcgatatgctcctcgaacacataccgtcagcagcggaa
gggaacgccaccaaagtgtacagacacttcacaggacctctcgacactccacttgcgcag
ggcatgctcgcttgcgacagcaaagcgccagcggtgatacacgtaacgaagctgtatacg
actgtcgatgcgcaagggttccacgcattcggccgtgtgatgtcgggacgcgcgcgcgtc
ggcgatagcgtcaaagtgctcggtgagggatattcggtcgaggatgaggaggatatggct
acagcgacgattgaggatgtgtgggtgagtgaggcgcgctacaaagttgctgcacaggaa
atcccagcaggctcttgggtgttgttaggtggagtggacgattcgatcgtcaagacttcg
acagtggtatcgaatgccgttgcaagtccagacgaactacacatctttaggccgatagcg
catattacggaatctattcttaaggtcgctgtcgagccgctcaatccacctgagttgcca
aggttactcgacggactgcgcagagtcaacaagagctatccgctgctgactactaaagtg
gaagaaagtggtgagcatatcattctcgggacgggtgagatctacctcgattcagttctt
catgacctccgtaccctctttgcagagatcgagattaaggtgagcgaccctgtcgtgaag
ttctgcgaaactgtcgtcgaaacctcggccataaagtgctatgccgatacacccaacaag
aagaacaaaatcactatcatcgctgagcctcttgaaaagggcattgcggaggacattgag
aagagacgtgtggggatgtggatgaccaacaaggaaagaggtaaattctttcaagataag
tatggttgggatgctctcgccagcagaagtatatggacatttggtcctgaagaagatggt
ccgaatgtgttgatcgacgatactctgccatcggaggtcgacaaggtgttactggggaat
gtgaaagaatccatcaaacagggattccaatgggcagcacgcgagggtccattagcagat
gagccactgcgtggggtcaagttccgcataatggatgcacaggtagccgaagagcccatc
taccgtggtggagggcaaatgatacctacagcgcgtcgtgtctgctattcaagtttcctg
atggcgacaccgcggctgatggagccagtgtactatgtcgagatgctcaccaccgccgag
agtgttccactcgtgtaccagctgctagcgaaacgtcgcggacatgtgacgaaagatgaa
cctaaggccggctctccgctgtatgttgtcaaagcactcataccggtgatggatgcgaac
ggattcgagacggacctcaggacccagtcagctggtacggcattcgcgttggaaattttc
gatcattgggctattgttccaggcgatcctgtcgatagcggcatacagctcagactgctc
gaaccagctcctgctcaacatcttgctcgcgacttcatgctcaaagttagacgtagaaag
ggcctcggtgatggtcagaaccttatggcgaaatacctcgacgatgacttcgttctcaat
atcgtggctgctggaaaatctgacctgctgttttaa
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integrated database retrieval system
