Nanchangia anserum: H8R18_01425
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Entry
H8R18_01425 CDS
T06883
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
wik
Nanchangia anserum
Pathway
wik03030
DNA replication
wik03410
Base excision repair
wik03420
Nucleotide excision repair
wik03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
wik00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
H8R18_01425 (ligA)
03410 Base excision repair
H8R18_01425 (ligA)
03420 Nucleotide excision repair
H8R18_01425 (ligA)
03430 Mismatch repair
H8R18_01425 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
wik03032
]
H8R18_01425 (ligA)
03400 DNA repair and recombination proteins [BR:
wik03400
]
H8R18_01425 (ligA)
Enzymes [BR:
wik01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
H8R18_01425 (ligA)
DNA replication proteins [BR:
wik03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
H8R18_01425 (ligA)
DNA repair and recombination proteins [BR:
wik03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
H8R18_01425 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
H8R18_01425 (ligA)
MMR (mismatch excision repair)
DNA ligase
H8R18_01425 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
H8R18_01425 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
Motif
Other DBs
NCBI-ProteinID:
QOX82064
LinkDB
All DBs
Position
312258..314630
Genome browser
AA seq
790 aa
AA seq
DB search
MAETTDHELSLERARHEHADLVARIEEDRHHYYDRDQPVRSDADYDASFRQLKQLEERYP
ELVSPDSPTQTVGGTRQVAFSPVTHLSPMASLEDVFSLEEVRAWWTRIHTELGLERIRVT
VEVKIDGLAVNLLYRRGHLERAATRGDGRIGEDVTANVRTISAIPQQLAGTGHPDLMEVR
GEIYFPLAEFAEFNAARVAAHEKPFVNPRNAAAGSLRQKNPAVTATRPLSMIAHGVGEVR
WGDTTPADAPRDLDDFYAKLSQWGLPTSPYTRVADSLETVESIIETIGRERSHISHEIDG
VVIKVNERGLQNALGSRARTPRWAVAYKFPPQEVFTRLLDIRVQVGRTGRVTPYGVMEKV
LVAGSHVERATLHNPQEVERKGVLKGDIVVLRKAGDVIPEIVAPVVERRTGTEEPFVMPS
ECPSCGAPLAPSREGEADWRCPNRAHCPAQLTERIAHIGSRGAFDVEGLGAEAALALTQP
EADRDAVAASLVSGEPVLLADGTTVVTMGECERAGVDEADLIDVADRLLPPAMSPVLHGE
AGIFDLDVEAVRDVYVWRYSAAPKAVQDAGAGEYVWRQVRYFWSVGRRKKSDPTQWLKGQ
EERPNKLIEQLVAQLDKAKSQPLWRVLVGLSIRHVGPTAAQALARAFGSMRAIREADTDQ
LAAVDGVGEVIAESVRDWFVDPDHVAIVEGWAASGVRMEDDRRAEAPQVLEGLTIVVSGS
VDGYTRESAKEALAVRGAKAASSVSKKTDVLVAGSGAGSKLAKAEQLGIPVVDAGDFERL
LAGEVPSRTS
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atggccgaaacgacggatcacgagctgagcctagaacgggcgcggcatgagcatgctgac
ctggttgcccgcattgaagaggaccgccaccattactacgaccgtgaccagcccgttcga
tcggatgccgattacgacgcgagctttcggcagctcaaacagcttgaggagcgctatccc
gagctcgtgagtcctgattcgccaacacagacagtcgggggcacacgccaggttgctttc
tccccggtgactcatctcagtcccatggcctcgctggaggatgtcttttctctggaagag
gtgcgcgcgtggtggacgcggattcacacggagcttgggctggagcgcatacgcgttacc
gtcgaggtgaaaattgacgggctggccgtgaacctcctctatcgtcgtggtcacctcgag
cgagcagcgacgcgtggtgacgggcgaattggcgaagacgttacggccaacgtccggact
atttcggcgattcctcagcagttggcgggcacggggcatcctgacctcatggaggtacgt
ggcgagatttatttcccgctcgccgagtttgcggagtttaacgccgcgcgggttgccgca
cacgaaaagcctttcgtcaatccccgtaatgcagccgccggctcgttgcggcaaaagaat
ccggcagtgacggccacgcgaccgttgtcgatgatcgcccatggcgttggggaggtgcgg
tggggagacacgactcccgccgatgccccgcgtgatctcgatgatttctatgccaagctc
agccaatgggggctgccgacatcgccgtatacgcgcgtggcggactccctcgagaccgtc
gaatccatcatcgagacgattggacgtgagcgctcacatatctcccacgagatcgatggc
gtcgtcatcaaggtaaatgagcgtggtcttcaaaatgcgttgggatcgcgcgcacgcact
ccccggtgggcggtggcgtacaagtttccgcctcaagaagtctttacccggctgctcgac
atccgagttcaagtcggacgcaccggccgagtcacaccgtacggagtgatggaaaaagtc
ctcgttgccgggtcacatgttgaacgggcaaccctgcataacccgcaggaggttgagcgc
aaaggtgtcctcaaaggcgacatcgttgtgttgcgtaaggccggcgacgtcatccctgag
atcgtcgccccggttgttgaacggcgcacgggcaccgaagaaccttttgtgatgcccagt
gagtgtccgtcatgtggtgcgccgttggctccgtcgcgcgagggcgaggctgattggcga
tgccccaatcgcgcgcactgtccggcacaactcaccgagcgcattgcgcatattggctca
cgtggcgctttcgatgtggaaggtctcggtgcagaggctgctctcgcgctgacacagcca
gaggccgaccgtgatgccgtcgcagccagccttgttagcggagaaccggtgttgttggcc
gacggcaccacggtcgtgacgatgggcgaatgcgagcgcgccggagtcgacgaggccgat
ctcatcgacgttgccgatcggttgcttcccccggccatgtcccccgtgttgcacggagaa
gccggcatttttgatcttgacgtcgaagctgttcgcgacgtttatgtgtggcgctatagc
gccgcaccgaaggcggtgcaagacgccggggcgggggagtacgtatggcgacaggtgcgc
tatttctggagcgttgggcgacgcaagaaatccgatccgacccagtggcttaaggggcag
gaagaacgcccgaacaagctcatcgagcaacttgttgcccagttggacaaggcgaagtcg
cagccgctgtggcgagtacttgtcgggttgtcgatacgtcacgttgggccgactgctgcc
caagctctggcccgcgcgtttggttcaatgcgcgcgattcgtgaagcggacacggaccaa
ttggcagccgttgatggcgtaggcgaggtgatcgcggaatcggtgcgcgattggtttgtc
gaccccgaccacgtcgcgattgtcgagggatgggcagcgtcgggagtacgcatggaagac
gatcgccgtgcggaggcccctcaggtccttgagggattgacgattgtcgtctcgggcagc
gtcgatggttatacccgcgagtctgcgaaggaagcgctagccgtgcgaggtgcgaaagcc
gcctcgtccgtgtcgaagaaaaccgacgtcctcgtggcgggaagtggtgccggttccaaa
ctggcaaaggctgaacagctgggtattccggtcgtcgacgcgggcgattttgagcggttg
ctcgccggcgaggtgccgagccgcacctcctag
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