Weissella koreensis: WKK_06125
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Entry
WKK_06125 CDS
T01577
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
wko
Weissella koreensis
Pathway
wko03030
DNA replication
wko03410
Base excision repair
wko03420
Nucleotide excision repair
wko03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
wko00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
WKK_06125
03410 Base excision repair
WKK_06125
03420 Nucleotide excision repair
WKK_06125
03430 Mismatch repair
WKK_06125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
wko03032
]
WKK_06125
03400 DNA repair and recombination proteins [BR:
wko03400
]
WKK_06125
Enzymes [BR:
wko01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
WKK_06125
DNA replication proteins [BR:
wko03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
WKK_06125
DNA repair and recombination proteins [BR:
wko03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
WKK_06125
NER (nucleotide excision repair)
GGR (global genome repair) factors
WKK_06125
MMR (mismatch excision repair)
DNA ligase
WKK_06125
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
WKK_06125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
RNA_pol_A_CTD
Nlig-Ia
HHH_3
5_3_exonuc
HMBD
UPF0758_N
HHH
Zn_ribbon_NUD
Hydrolase_6
DUF4796_N
DNA_photolyase
zf-tcix
Motif
Other DBs
NCBI-ProteinID:
AEJ24095
LinkDB
All DBs
Position
1287904..1289925
Genome browser
AA seq
673 aa
AA seq
DB search
MVEDQLTLAEAKEKLAIRQAQLKKWAVEYYQNDAPTVEDSDYDLVYQEVIDLEYQFPELI
TPDSITQKVGDQTKDDLPKVEHLQPMLSLGDVFSIEALDDWMNTTQQSTSDFLEYNAELK
IDGLAISLQYTNGQLTQASTRGNGQIGEDVTANVLNIKNIPHQLTEPLNLEVRGEIYMPK
AAFVSLNEQRDRDGLAPFANPRNAAAGSLRQLDPQITKQRQLAGFIYQVVDLQNQLEVKT
QSELLIRLANLGLPVNLTNQVVDNINTLKNYIEEKTAKRDDLAYGIDGIVVKVNNLDLHE
ALGATVKVPKWAIAYKFPAEEKQTILKDIEWTVGRTGAVTPTAVMDPVQLAGTTVSRASL
HNPEYLKAKDLRIGDTVTLHKAGDIIPEVGMAVLDQRPKDSVPYDIPNHCPVCGDELVHV
NGEIALRCLNPFCPAQIKERLTHFASRNAMNIDGLGPKIVEQLLDRGLIKTIADLYQLDE
VELLELDKFGPKATQNLLQAVEQSKQNSAERLLFGFGIRTVGAKVARQIMQKFKTIDQLA
KASVEEIANIQGLGLVIAENVVQYFQESLVQELLTQLQQLGVNFAYQAEAPVTVLPEFAD
QKIVLTGKLTMFSRSEAEKWLEQHGAQVVGSVSKKTNLLIAGADAGSKLAKAQDLGITIW
SEQDFQDIMQKQP
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atggtcgaagatcaattgacattagcggaagcaaaagaaaagttagctattcggcaagct
cagttaaaaaaatgggcagtagaatattatcaaaacgatgcacccacagtggaagatagt
gattacgaccttgtctatcaagaagtaattgatttagaatatcaatttcctgaattgatt
acacctgattcaattacgcaaaaagttggggatcaaacgaaagatgatctgccaaaggtt
gaacatttgcaacctatgttatctttaggcgatgttttttctattgaagctttagatgat
tggatgaatacaacgcagcagagtacttcggattttttggaatataatgcagaattgaag
attgatggattagcgattagtttacaatatacaaatggccaattaacacaagcttcgacc
cgaggtaatgggcaaattggtgaagatgttaccgcgaatgttttaaacattaagaatatt
ccacatcaattaaccgagcctttaaatttggaagttcggggcgaaatttatatgcctaag
gcagcttttgtcagcttaaatgaacaacgagatcgagatggattggcgccctttgctaat
cctcgaaatgcggcggcgggttctttgcgtcaacttgatccacaaattactaaacagcgt
caattggcaggctttatatatcaagttgttgatttacagaaccaattagaggtcaaaacc
caatcagaattgttaatacgtttagctaatttagggcttccagttaatcttacgaatcaa
gtcgttgataatataaatacgttaaagaattatattgaagaaaagacggctaaaagagac
gatttagcatatggaattgacggaattgtggttaaagttaataatttagatctacatgaa
gcattaggcgcaacagttaaagtccctaaatgggcaattgcttataaatttccagcggaa
gaaaaacaaacgattttaaaagatattgaatggacagttggacgcacgggggctgtcaca
ccaacggcagttatggatcctgttcaattagctgggacgacagtgtcgcgagcttcatta
cataatccagaatatttaaaagcaaaagatttgcgaattggtgatacagttacattgcat
aaagctggcgatattattccggaggtggggatggccgttttagaccaacgtcctaaggat
agtgtcccatatgacattccaaatcattgccctgtttgtggggatgaattggtgcatgta
aatggtgagattgccttacgatgcttgaaccccttttgccctgctcaaattaaagaacga
ttgacacattttgcatcgcggaatgccatgaatattgatggattaggtcctaaaatcgtc
gaacagttattggatcgtggattaattaaaacaattgcagatttatatcaattggatgaa
gtagaacttttggaattggataaatttggtccaaaagcgacccaaaacctattacaagct
gtggaacagtctaaacaaaattcggctgaacgacttttgtttggatttggaattagaacg
gtcggagctaaagtggctcgacaaatcatgcaaaaatttaaaacaattgatcaattagcg
aaggctagtgtggaagaaattgctaacatacaagggctaggtttagttattgctgaaaat
gttgttcaatattttcaagaatcgctggtacaagagctcttaactcagttgcaacaattg
ggagttaattttgcttatcaagccgaagcaccagtgacagttttgcctgagtttgctgat
caaaaaattgttttgaccggtaaattgacaatgtttagtcgatcagaagcagaaaaatgg
ttggaacaacacggtgcacaagttgtgggaagtgtttctaaaaagaccaatcttctcata
gcaggtgctgatgctggaagtaaactcgctaaagctcaagatttaggcattaccatctgg
tctgaacaagattttcaagatattatgcaaaagcaaccgtaa
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integrated database retrieval system
