Wenzhouxiangella marina: WM2015_1647
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Entry
WM2015_1647 CDS
T04011
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
wma
Wenzhouxiangella marina
Pathway
wma03030
DNA replication
wma03410
Base excision repair
wma03420
Nucleotide excision repair
wma03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
wma00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
WM2015_1647
03410 Base excision repair
WM2015_1647
03420 Nucleotide excision repair
WM2015_1647
03430 Mismatch repair
WM2015_1647
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
wma03032
]
WM2015_1647
03400 DNA repair and recombination proteins [BR:
wma03400
]
WM2015_1647
Enzymes [BR:
wma01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
WM2015_1647
DNA replication proteins [BR:
wma03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
WM2015_1647
DNA repair and recombination proteins [BR:
wma03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
WM2015_1647
NER (nucleotide excision repair)
GGR (global genome repair) factors
WM2015_1647
MMR (mismatch excision repair)
DNA ligase
WM2015_1647
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
WM2015_1647
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
HHH
PTCB-BRCT
GFRP
Motif
Other DBs
NCBI-ProteinID:
AKS42017
UniProt:
A0A0K0XWK8
LinkDB
All DBs
Position
complement(1988291..1990297)
Genome browser
AA seq
668 aa
AA seq
DB search
MGSSPAERAADLRQQINDHNYRYYVLDDPIVSDAEYDRLLRELEALEADHPELVSEDSPT
QRVGAAPAPGFETVTHRVPMLSLSNAFSEEEVAEFDRRIRDRLDLETVDYIAEPKLDGLA
IALRYEQGRLVLAATRGDGRQGEDVTANVRTIRAIPLTLRGEHIPDELEVRGEIFMTRSG
FDRLNRGLADEGEKQFVNPRNAAAGSLRQLDSRVTARRPLRFYCYGAASEAGLPQSQSNT
LEALRELGLPVSPEVRRVRGLEGLLEYYERIGGRRASLDYDIDGVVYKVDDLDQQRELGF
VSRAPRWALAHKFPAQEETTILHDIEVQVGRTGALTPVARLEPVFVGGVTVTNATLHNAD
EIRRKDVRPGDTVVVRRAGDVIPEVVRSIPEKRPEGAEVWTMPSECPACGSSVEQVEGEA
VARCTGGLVCPAQRKRALEHFASRAAMDIDGLGSRLIEQLVDADLVHSPADLYHLDLATL
AGLDRMAEKSASNLIEALEKSKSVSLGRLLFALGIREVGEVTASNLARHFGTLDALADAD
VESLEAVPDVGPIMARHVRAFFDEAHNREVIRALLEAGVHYEPEVVVETDSLPLSGRTYV
LTGALASMPRSEAKKRLEALGAKVTSSVSKNTTALIVGADPGSKLDKAESLGVEVLDEDA
LEALLESP
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgggctcaagtccggccgagcgcgctgccgatctccggcagcagatcaacgatcacaat
taccgttactacgtcctcgatgacccgatcgtctcggatgccgagtacgaccgcctgctg
cgcgaactcgaggcgctagaggccgatcatcccgaactcgtcagcgaggattcgcccacc
cagcgcgtcggagccgcccccgcacccggcttcgagaccgtcacgcaccgcgtgccgatg
ctgtccctgtcgaacgccttcagcgaggaggaagtggccgaattcgaccggcggatcagg
gatcgactggacctggaaacggtcgattacatcgccgagccgaagctggacggcctggcg
atcgcgctgcgctacgagcaggggaggctggtgctggccgcgactcgaggcgacggtcgc
cagggcgaggacgtgacggccaatgtgcgcacgatccgtgccattcctttgacgctgcgt
ggcgagcacatcccggatgagctcgaggtgcgcggcgagatcttcatgacgcgctcgggt
ttcgatcgtctcaaccgtggtctggccgacgagggcgagaagcagttcgtgaacccgcgc
aacgcggcagccggcagcctccggcagctcgactcgcgggtcacggctcgtcggccactg
cgcttctactgctatggggccgccagcgaggcgggcctgccacaaagccagtccaacacg
ctcgaggcgctcagggagctcgggctgccggtcagcccggaagtgcgtcgcgtccggggc
ctcgagggtctgctcgagtactacgagcggatcggtggccgacgggcgagcctcgattac
gacatcgatggggtggtctacaaggtcgatgatctcgatcagcagcgtgagctcggcttc
gtcagtcgggcaccgcgatgggcgctggcacacaagtttccggcccaggaagaaaccacg
atcctgcatgacatcgaagtgcaggtgggccgcaccggtgcactgacgcccgtggccagg
ctggagcccgtcttcgtcggcggggtcaccgtcaccaatgcaacattgcacaacgccgac
gagatccggcgcaaggacgtgcgcccgggcgacaccgtggtcgttcgccgcgccggtgac
gtgatccccgaagtcgtgcgttccattccggaaaagcgtcccgagggcgccgaagtctgg
accatgcccagcgaatgcccggcctgcggctcctcggtagagcaggtggagggagaggcg
gtggcacgttgcaccggaggcctcgtctgcccggcccagcgcaagcgcgctctggagcac
ttcgcctcccgcgccgccatggacatcgacggcctcggtagccgcctgatcgaacaactg
gtcgacgccgatctcgtgcacagtcccgccgatctctaccacctcgatctcgccaccctg
gcgggcctggatcgaatggccgagaagtcggcctcgaatctgatcgaagcgctggagaag
agcaaatcggtctctctggggcgcctgctgtttgcgctgggtatccgtgaagtcggcgag
gtgacggcatccaatctcgcccggcacttcgggaccctggacgccctggccgacgcggat
gtcgaatcgctggaggccgtccccgacgtcggcccgatcatggcccgtcacgtgcgtgcc
ttcttcgacgaggcccataaccgtgaagtcatccgcgcgttactcgaggcgggcgtgcac
tacgagccggaagtcgtggtggaaaccgattcactgcccctgagcgggcggacctacgtg
ctgaccggcgcgctcgccagcatgcctcgatccgaggcgaagaagcgcctggaggccttg
ggcgccaaggtgacttcgagcgtctcgaagaacacgaccgctctgatcgtcggcgccgat
cccggatcgaagctggacaaggccgagtccctcggtgtcgaggtgctggacgaggatgca
ctcgaggcgctgctcgaatccccttga
DBGET
integrated database retrieval system
